Bombus affinis (rusty patched bumble bee): 126924265
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Entry
126924265 CDS
T09368
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126924265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
baff03041
]
126924265
03009 Ribosome biogenesis [BR:
baff03009
]
126924265
Enzymes [BR:
baff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126924265
Spliceosome [BR:
baff03041
]
Complex A
U2 snRNP components
U2 related factors
126924265
Complex B
126924265
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
126924265
Ribosome biogenesis [BR:
baff03009
]
Eukaryotic type
90S particles
Helicases
126924265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
SRP54
AAA_19
nSTAND3
T2SSE
AAA_7
Flavi_DEAD
AAA_16
ABC_tran
AAA_25
TsaE
Motif
Other DBs
NCBI-GeneID:
126924265
NCBI-ProteinID:
XP_050594510
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All DBs
Position
14:930067..935059
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AA seq
718 aa
AA seq
DB search
MSKRRIEVVDPYIKRKADGSATSNSTTIPSTAPKNQVQLNPYTSLPFTPRYHELYKKRIT
LPVFEYRTDFMRLLAQHQCIVLVGETGSGKTTQIPQWCVEYSRRIDSKGVACTQPRRVAA
MSVAQRVSEEMDVPLGVEVGYSIRFEDCSSPKTILKYMTDGMLLREGMSDPMLDAYQVIL
LDEAHERTLATDLLMGVLKEVIKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHP
VEIFYTPEPERDYLEAAIRTVIQIHMCEEVAGDLLLFLTGQEEIEEACKRIKREMDNLGP
EVGELKCIPLYSTLPPNLQQRIFEPAPPTKPNGAIGRKVVVSTNIAETSLTIDGVVFVID
PGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQDNT
YPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTDL
GAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNESKKAADDAKMRFA
HIDGDHLTLLNVYHAFKQNFEDPQWCYDNFVNYRSLKSGDNVRQQLSRIMDRFCLKRTST
DFTSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQIVQLHPSSCLDHKPEWVIYNE
FVLTTKNYIRTVTDIKPDWLLKIAPQYYDLQNFPQCEAKRQLEVIQAKLDSKQYQEGF
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacgaaggatcgaggttgtggatccgtatattaaacggaaagcagatggctcg
gctacatccaatagcacaactataccttcgacagcaccaaaaaatcaagttcagctaaat
ccttatactagtctaccttttacaccaagatatcatgaactttataaaaagagaatcact
ttaccagtatttgaataccgtactgattttatgaggttattggcacaacatcaatgtatt
gtactcgttggagaaacaggttctggaaaaactacacaaataccacaatggtgtgtagaa
tattcaagacgtattgacagcaagggcgttgcttgcactcagccaaggagagtagcagct
atgtctgttgcacaaagagtttcagaagaaatggatgttccattaggtgtggaagtagga
tacagtattcgttttgaagattgtagttctccgaaaactatattgaagtatatgactgat
ggtatgctgttacgtgaaggcatgtcagatcccatgcttgatgcttaccaagtgatattg
ttagatgaagctcatgaaagaactttagccacagatttgcttatgggtgtgttaaaagaa
gtgattaaacaaagaccggatttgaaacttgtgattatgagtgcgactttagatgctgga
aaatttcaacagtattttgataatgcacccttaatgaacgtacctggccgaactcaccct
gttgaaattttttatacacctgagcctgaaagggattacttagaggctgctatcaggaca
gttattcaaattcatatgtgtgaagaagtagcgggtgatttgctcctctttttaactggt
caagaagaaatagaagaagcttgtaaaagaatcaaaagggagatggataatttaggtcca
gaagtaggtgaacttaaatgtataccactttattctacactgcctccaaaccttcaacaa
agaatctttgaaccagcaccacctacaaagcctaatggtgctattggtagaaaagtagta
gtttcaacgaatattgcggaaacgtcgttaactatcgacggtgtcgtctttgtgatagat
cctggatttgcaaagcaaaaggtgtataatcccagaattcgtgtagaatctctccttgta
tcacctattagtaaagcatctgcgcagcaaagagctggtagagctggtcgcacaaggccc
ggaaaatgtttcagattgtatactgagaaggcatataaaaacgagatgcaagataatact
tatcctgaaattttaagatctaatcttggcagtgttgtattgcaactgaaaaagcttggc
attgacgatttggttcatttcgatttcatggaccctcctgcaccagaaactcttatgagg
gctttagaacttcttaattatttggctgctttagacgatgatggaaatctcacagatttg
ggtgctgtgatggcagaatttccattagatcctcaattggcaaaaatgctcattgcatct
tgcaatcataactgcagtaatgagatattgagcattactgctatgttgtcagtcccgcag
tgttttgtgaggccaaatgaatcaaaaaaagctgcggatgatgctaaaatgcgatttgca
catatcgacggagatcatttaacgttactgaatgtttaccacgcctttaaacaaaatttc
gaagatccacaatggtgttacgataacttcgtcaattaccgatctttaaaaagtggggat
aatgttaggcaacaactaagtagaataatggatagattttgtttaaaacgtacctctaca
gacttcacatcaaaagattattatatcaacattagaaaagcccttgtgaacggttttttt
atgcaggttgctcatttagaaaggactggtcattatttgactattaaagataatcaaatt
gtacaacttcatccaagcagttgtttggatcataaacccgaatgggtaatttataacgag
ttcgtgcttacgaccaaaaattatatcagaacagttacagacattaagcctgattggttg
cttaaaatagcaccacaatattatgatttacaaaacttcccacaatgtgaagcaaagaga
caattggaagtgatccaagcgaagttagattcgaaacagtatcaggaaggattctaa
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