Bombus affinis (rusty patched bumble bee): 126924926
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Entry
126924926 CDS
T09368
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
126924926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
baff03021
]
126924926
03019 Messenger RNA biogenesis [BR:
baff03019
]
126924926
Transcription machinery [BR:
baff03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
126924926
RNA polymerase I system
126924926
Messenger RNA biogenesis [BR:
baff03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
126924926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW7_SPT5
KOW2_Spt5
KOW
KOW6_SPT5
Spt5-NGN
KOW5_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
CTD
SH3_KIN17_C
CoV_nucleocap
Motif
Other DBs
NCBI-GeneID:
126924926
NCBI-ProteinID:
XP_050595889
LinkDB
All DBs
Position
15:3189197..3194648
Genome browser
AA seq
1133 aa
AA seq
DB search
MSDSEASNLSDNESDRGVGGSESDQEENHSVKSAAGSDGGNAGERSRSVSRSRSPSRSQS
RSPRRWRSRSRSASGSEDGREDEAEEARSGDEEMVEPEEEPEGEDLEGSSEYDEEEEEED
DDRPRRKRRKDKYRDFIIDEAEVDDEVEDDDEWEEGAQEIGIVGNEVDELGPTAREIEGR
RRGTNLWDSQKEDEIEEYLRKKYADESLATRHFGDGGEEMSDEITQQTLLPGVKDPNLWM
VKCRIGEEKATVLLLMRKFITYQYSNEPLQIKSIVAPEGVKGYIYIEAYKQPHVKAAIEN
VGNLRMGIWKQQMVPIKEMTDVLRVVKEQTGLKAKQWVRLKRGIYKDDIAQVDYVDLAQN
QVHLKLLPRIDYTRPRGALRTAQSESEALKRKRKRRPAAKPFDPEAIRAIGGEVTSDGDF
LIFEGNRYSRKGFLYKNFTTSAIIAEGVKPTLSELERFEEAPEGVELDLSGTPGTGAGNK
EDATVTHSFSTGDNVEVCEGELINLQGKIVSIDGNMIMVMPKHEELREALEFQASELRKY
FTMGDHVKVVAGRYEGDTGLIVRVEQNRVVLFSDLSMHELEVLPRDLQLCSDMATGVDSL
GQFQWGDLVQLDAQTVGVIVRLERENFHVLSMHGKVIEARPQGLTKRRENRNAVALDSQQ
NTIQRKDIVKVVDGPHAGRGGEIKHLYRSFAFLHSRMFVDNGGIFVCKTRHLQLSGGNKS
NMSSMSPVAGFMSPRIASPMHPSGGGFGRGGGGGRGRGRGGGARRDRELIGTTIKITGGP
YKGNVGIVKDATETTARVELHSTCQTISVDRSHIANVAVLTKDGGFSSYNRTPAYGGGQT
PMYARDGSKTPMHGSQTPMYENGSRTPHYGSMTPSHDGSRTPGQSGAWDPAVTNTPARTN
DFDGYSMEEGGSPGYAPGYPSTGPFTPQTPGTMYGSEQSFSSYQPSPSPAGSATASPSPT
GYVATPSPTGTGYTTSPHGAFATPSPMGYSPMTPGVAGSPYNPQTPGASLDTNVGSGIIG
GADWHTTDIEVRIRDSHQDPALAGQQGVVRGISGGMCAIFLPVEDRVVNLICEDLEPVVP
SRGDRVKVIIGEDREAVGTLLSIDNQEGVVKLNKDEVKMLHLRFLCKMKASNT
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgtcggattcagaggcgagcaatctatcagacaatgaaagcgatcgaggagttggcggc
agcgaaagtgaccaagaagaaaaccattcagtgaaatccgcagctggcagcgatggtgga
aacgctggtgaaagatcacgtagcgtctctcgcagtagaagtccgtccaggtcgcaatcg
agaagtccacgcaggtggcgatcacgatctcgatcagccagcggttcggaggatggtaga
gaagatgaagcagaggaagcaagatctggtgatgaagagatggtggagcctgaggaagaa
cctgaaggagaagatttggagggaagtagcgaatatgacgaagaagaagaagaggaggat
gatgatagacctcgtaggaaaagaagaaaagacaaatatcgtgattttatcatagacgaa
gctgaagtagatgatgaggttgaagatgatgatgaatgggaagaaggtgcccaagaaatt
ggtatcgttggaaatgaagtggacgagttaggtcctacagccagagaaattgaaggcagg
cgtagaggaactaatctttgggattctcaaaaggaagatgaaatagaagaatatcttaga
aaaaagtatgcagatgaatctcttgctactcggcattttggtgatggtggtgaagaaatg
agtgatgaaatcacacaacaaactttactgccaggtgtgaaagatccaaatctgtggatg
gtaaaatgccgtattggagaagaaaaagcaacagtactattgttaatgcgaaaatttata
acataccaatattcaaatgaacctcttcaaataaaatctattgttgcacctgaaggagta
aagggatatatttacatagaagcgtacaaacaaccacacgtaaaggcagccatcgaaaac
gtaggaaatctaagaatgggtatttggaaacaacagatggtaccaatcaaagagatgact
gatgtgttacgtgtagttaaagaacagacaggcttaaaagcgaaacaatgggttagacta
aaaagaggcatttataaagatgacatagctcaagttgactatgttgacttggcacagaat
caggttcatttgaaattgttgcccagaattgattatactagaccacgtggagctttgaga
acagcacaaagcgaatctgaagccttaaaacgcaagagaaaaagaagaccagcagccaaa
ccgtttgaccccgaagcaattcgtgctatcggaggagaagtcactagcgatggtgacttc
ttaattttcgaaggaaatagatatagtagaaaaggatttttgtataaaaattttaccaca
agtgcgattatcgcagaaggtgtgaaaccaacattatctgaactagaaaggttcgaggag
gctcccgagggtgtcgaattagatttaagtggaactccaggaactggtgcgggtaataaa
gaagatgcgacggtgacccattctttcagtacaggagacaatgtcgaagtatgcgaggga
gaattgattaacttgcaaggaaaaattgtctctatagatggaaacatgattatggttatg
ccaaaacatgaggagcttagagaagccttagaatttcaagcgtctgaattacgaaaatat
ttcactatgggcgaccacgttaaggttgttgcaggaagatatgagggtgataccggttta
atagttcgagtcgaacaaaatagagtagttttgttttctgatctttcaatgcacgaatta
gaagtgcttccaagagatctacaactttgttcggatatggcaactggagtagacagttta
ggtcaattccaatggggtgatttagtacagctggacgcacaaaccgtgggtgtaattgtt
cgattggagcgtgaaaactttcacgtactctcaatgcatggcaaggttatagaagctaga
cctcagggactcacaaagagacgtgagaatagaaatgcagtggcgttagactcacaacag
aacactatacaaaggaaagacattgtcaaagtagtagatggtccacacgctggaaggggc
ggagaaataaaacatttatacagaagctttgcatttttgcattcgcgaatgttcgttgac
aacggtggaattttcgtttgcaaaacgagacatttgcaactttctggtggaaataagtcc
aatatgtcgtctatgtcacctgtggcaggattcatgtcgccaagaatagcttcgccaatg
catcctagtggaggtggcttcggaagaggtggcggaggtggaagaggcagaggtcgtggt
ggtggagccagacgtgacagagaattgataggaaccactatcaaaataactggcgggccg
tataagggaaatgttggaatagtaaaagacgctacagagacaactgctcgtgtagaatta
cactccacctgtcagaccatctccgtggacagatctcacattgcgaacgttgctgtactc
acaaaggatggtggtttcagcagctacaacaggacaccagcatatggtggtggacagaca
cccatgtatgctagagatggatcgaaaacacccatgcatggctctcaaacaccaatgtac
gaaaatggttctcgtacacctcattatggctcaatgacgccatcccacgatggttcacgc
acaccgggacaatctggtgcctgggatccagctgttaccaatactcctgccagaacgaac
gacttcgatggatacagtatggaagaaggcggatctccaggttatgcgccaggttatcct
tcaactggaccattcacgccacaaacgcctggcacgatgtacggctcagagcagagcttc
agttcatatcaaccgagtcctagcccggcaggaagtgccactgcaagtccaagtcctaca
ggatacgttgcaactccctcaccaactggtactggatatactactagtccgcatggagcc
tttgccacgccttcacccatgggttacagtcctatgactccaggagttgcaggtagccca
tacaatccacagacaccaggtgccagtctagatacaaatgtcggttctggaatcattgga
ggagccgattggcacacaacagatattgaagttcgaattcgtgactctcatcaagatcct
gcgttagctggccagcaaggtgttgttcggggaatatccggtggcatgtgtgcgatcttc
ctacctgtagaagacagagtagtgaatttgatttgcgaggatttagaaccggtagttcca
tcacgaggtgaccgagtcaaagtgattatcggagaagacagagaagcagtaggcactctg
ctatccatagataaccaagaaggtgtagtgaaattaaacaaggacgaagtgaaaatgttg
cacttgcggtttttgtgcaagatgaaggcatcgaatacataa
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