Bombus affinis (rusty patched bumble bee): 126925110
Help
Entry
126925110 CDS
T09368
Name
(RefSeq) uncharacterized protein LOC126925110
KO
K15542
polyadenylation factor subunit 2
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126925110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baff03019
]
126925110
Messenger RNA biogenesis [BR:
baff03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
126925110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR5
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_EML
WDR55
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_IFT140_1st
EIF3I
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
WD40_RFWD3
eIF2A
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_SCAP
Beta-prop_DCAF4
PEP5_VPS11_N
Beta-prop_WDR41
Beta-prop_WDR11_2nd
WD_LRWD1
Beta-prop_SPT8
Beta-prop_ACSF4
WDR54
Motif
Other DBs
NCBI-GeneID:
126925110
NCBI-ProteinID:
XP_050596318
LinkDB
All DBs
Position
15:10469253..10477627
Genome browser
AA seq
1056 aa
AA seq
DB search
MSANTQFANPPPAISLPNMSVPPPATPNLSAPPPNLTTINTSGSYQHRYTNHRDGTRGFF
KPFRPYHAPKIVAAGQDTLQDEFDGKRLRKSVMRKTVDYNSAIIKSLENRVWQRDYRDRR
ALQPDVMYYPDLLPPPSYVDNPINAVTTRFVKTATNKMRCPIFCMAWTPEGRRLVTGASS
GEFTLWNGLTFNFETILQAHDSPVRTMVWSHNESWMVTGDHAGYVKYWQSNMNNVKMFQA
HKEAIRGLSFSPTDHKLATCSDDGTVRIWDFLRCHEERILRGHGADVKCVHWHPQKSLVI
SGSKDNQQPVKLWDPKTGQSLATLHAHKSTVMDVKWNENGNWLVTASRDHLLKLFDLRNL
SQEVQTFRGHKKEASSVAWHPSHEGLFCSGGSDGAILFWHVGADKEVGAIEQAHDSIVWT
LAWHPLGHILCSGSNDHTSKFWTRNRPGDLMRDKYNLNTLPAGSAGVDDHEIADEAAVIP
GMGPEDRINADGEPEDKSGGIPGLDLDHAVDEGKKFANKKVPYSKPIPRNFQAQWNEMEA
EDMEQVEALNAFVNQLIETTPGAVPLNEVTPNGIILYGKMIPVEPGSKLAEAISKGNDAI
NKLVFSGEIEELRDVVGPPDNMDDSEEYLQDDSEIDYSKVPDIELPPPLPSSKFAQNPEL
LKALNRGGKRKFDQLIGWSDGGASDRTSKIHQPVFGGVMTEDSQSSDTDLRYTGTKSNQH
SNETNSFHSGQDEDLRKLSHGENARNANRDEDLRFNISSGPGRPSSRSDYDVRSNYADKD
FRSSHGFPLKKSLDNDIYDDRDRDGNSRWDDEKSLNDGPRKGDGGFSGNFDKRDNMPLAI
GSGISNSIPHLGNSISHMSSHHNMQNINPNMTPPIQSLVPHPNMSQHPMQNKPLHPGMQG
IDGPMHMMHHPNMHPGFGPNGPPPGNFGPNFRPPNGNFGPNQHFRPSPLPPFGPNQGPFG
NNFQGLPNFRGPNSGPPNFDRPGFGPGFRGQNPGQNPPNNFNSNFGNFGNKLGPNRGMNR
GPNDNNMGRMGRSGYNNRGRGRDGDQPRGIRGRDNY
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcaaatactcaatttgcaaatcctccaccagctataagtttacctaatatgtct
gttccacctcctgctactccaaatttatcagctccgcctcctaatttgactacaataaac
acatctggaagttatcagcacagatacactaatcatagagatggaacaaggggtttcttt
aaaccattcagaccttatcatgcacccaaaattgttgcggctggtcaagatacgttgcaa
gatgaatttgatggcaaaagacttaggaaatctgttatgcgtaaaactgtggattataat
tctgccattataaaaagcttagagaatcgagtgtggcagagggattacagagacagacgt
gccctacagccagatgtgatgtattaccctgatctgcttccaccacctagttatgttgac
aatcctataaatgcagtcaccacaagatttgtgaagactgcaacaaataaaatgcgttgc
cctattttttgtatggcttggacaccagaggggagacgccttgttactggtgcatctagt
ggagaatttaccttgtggaatggtcttacctttaattttgaaactattttgcaggcacat
gatagtccagtgagaacaatggtatggtcgcacaatgagagctggatggtcacaggagat
catgcaggctatgtgaagtattggcagagcaatatgaacaacgtcaagatgtttcaggcg
cacaaagaagcgattagaggactcagtttcagtccaacggatcacaaattggcaacatgc
agtgatgatggaacagtcagaatttgggactttcttcggtgtcatgaagaacgaattctc
aggggtcatggtgctgatgtgaaatgtgtgcactggcatccacaaaaaagtctagtcatc
tctggaagcaaagataatcagcaaccggttaaattatgggatccaaagactggccagtca
ctcgcaacattacatgcacacaagtcgacagtaatggatgttaaatggaatgaaaatgga
aattggctggtaaccgcgtcgcgggaccatttgctcaagttgtttgatcttcgaaattta
agtcaagaagttcaaacatttcgtggtcacaaaaaagaagcttctagcgtcgcgtggcac
ccgagtcacgagggtctattttgtagcggtggcagcgatggagctattttattctggcac
gttggcgccgacaaagaggtaggtgcgatagaacaagctcacgacagtatagtttggacg
ttagcttggcatccgctgggacacatcctgtgttccggtagtaatgatcacacttcaaag
ttttggacacgaaacaggcctggtgatttaatgagagacaagtataatctcaacacttta
cctgctggatcggctggcgttgatgatcatgaaattgctgacgaagcagctgtaatacct
ggtatggggccagaagatagaatcaatgccgatggcgaaccagaagacaaaagcggtggt
atccctgggttagatttggatcatgcagtcgacgaagggaagaaatttgctaacaagaaa
gttccatatagcaaaccaattccaaggaatttccaagctcaatggaatgagatggaggct
gaggatatggagcaggtagaagctctaaatgcatttgtgaatcagttgatcgaaaccaca
ccaggagcggtaccattgaatgaagtgacacctaatggtattatattgtacggaaaaatg
attcctgtcgaacccggttctaagttagcggaagcaattagcaaaggaaatgatgccata
aataaactagtattttccggagaaatagaagagctacgagacgttgtgggtccaccagat
aacatggacgattccgaagaatatttgcaagacgacagcgaaatagattattccaaagtt
cccgatatcgaacttcctccacctttacccagttccaaatttgcacagaatcctgaattg
ctgaaagcgttgaatcgcggtggaaagcggaaattcgatcaactaatcggttggagcgac
ggtggagccagcgacagaacatcgaagattcatcaaccggtctttggcggagtgatgacg
gaagactcacaatccagtgataccgacttaaggtacacgggaacgaaatcgaatcagcac
tccaacgagactaactctttccacagtggacaggacgaggatctcaggaaactttctcat
ggtgaaaatgctcgaaatgcgaatcgcgatgaagacttacggtttaacatctctagcgga
cctggaaggcccagttcacgttccgattacgatgtaaggagtaattacgcggataaggac
tttagaagttcgcatggattccccttgaagaagtctttggataacgacatttacgatgac
agagatcgggacggtaattcgcggtgggacgatgagaaatcattgaatgatggtcccaga
aaaggggatggtggtttttcagggaactttgataaacgtgataacatgccgctagctata
ggctccggcataagtaacagcatacctcatttaggcaacagtatatctcacatgtcgagt
caccataatatgcaaaatattaatcccaatatgaccccgccgatccaaagtttagtacca
catccaaatatgtctcagcatcctatgcagaataaaccgctgcatcctggtatgcaagga
attgacggtccaatgcacatgatgcaccatcctaacatgcatcccggttttggtcctaac
ggaccaccacccggaaactttggccctaactttagaccgccaaacggtaatttcgggccc
aatcaacactttaggccgagcccattacctccattcggaccaaatcaaggaccgttcggt
aataactttcaaggtttgccgaatttccgagggccgaactcaggtccgccaaattttgac
cggccgggttttggtcctggtttccgcggtcaaaaccccgggcagaacccgccaaataat
tttaattcgaattttggtaatttcggaaataaactgggacctaatcgtggcatgaaccga
ggtcccaacgacaataacatgggaagaatgggaaggagcggttataataatcgtggtaga
ggacgtgatggcgatcaaccacgagggattcgaggaagggataattattga
DBGET
integrated database retrieval system
