Bombus affinis (rusty patched bumble bee): 126925291
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Entry
126925291 CDS
T09368
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
baff
Bombus affinis (rusty patched bumble bee)
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
baff03009
]
126925291
Ribosome biogenesis [BR:
baff03009
]
Eukaryotic type
90S particles
Other 90S particles
126925291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
S1
S1_RRP5
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
OB_RRP5_4th
TPR_19
Spt6_S1
TPR_15
UTP6_C
S1_2
ARM_TT21_5th
TPR_6
Cwf_Cwc_15
Motif
Other DBs
NCBI-GeneID:
126925291
NCBI-ProteinID:
XP_050596610
LinkDB
All DBs
Position
16:3319510..3324301
Genome browser
AA seq
1390 aa
AA seq
DB search
MTLKNFPRGGKEIQKRKPSDLLFAKYEKIGKRNREKQRAKKQEEEPNFVPNTAERLSYAT
ISEGLVVLGCIYEVTNYDLLISLPGGLIGRAQITDISECYTNLLQSLVKSQDSQTNEFKS
LPELYTCGDYVVCYVKAIQSQERLQISISLEPNLINQSLDVNYLDSGSKIVCTISSIEDH
GYVVDTGLINVRAFIPTKESGNEKCLFPGKQLLCYVKEVKTNENTSTITLTLKQKLVKAI
CETEIKSLDSLMPGTKFNLSIKKVLFNGLCVSLDENNVGFINQTYLDEPLSKYSNNLKIT
GTLLYILPTIKFAYFSSTIDKNRDNTIKPGDVVKEATVLFRESGGIVLQLAKSGIRGFVS
FKRTSVEYDTIIEKFAPGTTHKCRILSYSWLDGIYICTMQRSLLEQKYFSLSDFKPGDVV
NVKITNIDKVNGFVNVQYGKFNGQIAPDHISDEGLSALKKLKVDKEVEARVLFVHIGRKK
VYLTLKRSLITSDLPILANIQDAKTDSKHHATIIQIHKHGILVKFFGDVKGWIPHTALDT
ETSNINWNYSIGETILVKIQTVNTDSGEITLSVANQDIQDEKATFHIGEEVAGTIIESST
QGLYLKISKNEGQTVSTGFLPAGHMSPCMEIAALLASKYVPGDTLSALVFATVPSLILTR
TFVTQGRYRNFEKLKIGDCIPCTIKDMEPDGIRLILPVAECTPFGYVSYSNVSNFNLLHT
NQILMAKIYSINKKKQQLGLTLSLKKIYDDLSDPKSRMVAALDTLILYFNKLVELSRSSY
YKNRPIASVKLGQRVTGKIEKITADGLVVQLQNNLLGIVSKDHYSENKKIGDKISGTIIW
KNYVHELVELTTLSSIMHKISAKQDKQIQFPDGKLLRGRILMVTNWFILIFLQGIGKGTL
AAIPVRRHINDLQPDLTPYTIHSKIKCYALLNSEESDIMPLCIIKSAFEKKYCVREKSGD
NNNLKRKKQNQENVVLTKKIKIEKLQEVPKMESKEKRNREKPENDLEKEYSKTMCDEQTG
EERIKLEDIKPSKKNLRYALKNVNNDTDNEQRSRTSACGFFWDDNPDLTLLQDKDSSSDS
EDEIEEKPKLKNKKLSAAERREQERQKEHEIRQREEALANNLLPNSVDQFDRLVLASPDS
SIVWLQYMAYHLQTTEIEKARAVARRAVKTISFREENEKLNVWNAWLNLESKYGIPESLN
DVFQEAVRSNDSLKIYNHMLTVHVEAGRQIELEKTINTMIGKFKHIPEIWFNCGEALVKM
GLKNKSRHIMQRALQSLPASEHVNLMARFAIMENKFGDKERAQTLFEQILSSYPKRVDIW
SCYIDSLVKSNDIDIARKVLERAVAQTLPPRKMKILFKKFINFEEQHGTQEDVIRVQQMA
VEYVEKQCTK
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgacgttgaaaaactttccaagaggtggaaaagaaatacaaaaaagaaaaccgtcagat
ttgttatttgccaaatatgagaaaattggtaaaaggaatcgtgagaaacagagagcaaag
aaacaagaagaggaaccaaattttgttcccaacactgcagaacgattatcatatgcaaca
atatctgaaggattagtggtattaggatgtatttatgaagtgacaaactacgatttgctg
atatctttgccaggcggcttaataggtcgtgcccaaattacagatatcagtgaatgttac
acaaatttgttgcaaagtttggtcaaatcacaagattctcagacaaacgaatttaagtcc
cttcctgagttatatacctgtggagattatgtcgtatgttatgtaaaagctatacaatcg
caagagagattgcaaatttcgatatctcttgagcccaatctgataaatcaaagtttagat
gttaattatttagatagtggctcaaaaatagtatgtactattagtagtatagaagatcat
ggttatgtggtagatacaggtttaataaatgtaagagcgtttattcctactaaggaaagt
ggcaatgaaaaatgtttgtttccaggtaaacagcttctatgctatgttaaagaagtcaaa
actaatgagaatacttcaacgattacattaactttgaaacagaagcttgttaaggctatt
tgtgaaacagaaattaaatcattggacagcttgatgccaggcacaaaatttaatctttcc
ataaagaaagttttgtttaatggcttatgtgtttcattagatgaaaacaatgtaggattc
ataaatcaaacatatttagatgagcccttatctaaatactcaaataatctgaaaattact
gggacattattatatattttgccaaccatcaaatttgcatacttcagctcgacgatagat
aaaaatagagacaatactattaagcctggagatgttgtaaaagaagctactgttctattc
agagaatctggtggaatagtactacaattagctaagagtggaatacggggattcgtttcc
tttaaaagaacaagtgttgaatatgatacaatcattgaaaaatttgcacctggtaccaca
cataaatgcagaatattatcatacagctggttagatggaatttatatctgtaccatgcag
cgttcgctgttggagcagaagtacttttcattgtctgattttaaacctggcgacgtggta
aatgtaaagattacaaatatcgataaagtgaatggttttgttaatgtacaatatggtaaa
tttaatgggcaaattgcaccagatcatatatctgacgaaggtttaagtgctttaaagaag
ttgaaagtcgacaaagaagtagaagcaagagtcttgttcgttcatataggccgaaaaaaa
gtatatctcactttgaagagatctttaataacgagtgacttgcccattttagcaaacata
caagacgcgaaaactgactcaaaacaccacgcaactatcattcaaatacataagcacgga
atattggtaaagttttttggggatgttaaaggttggattccacatactgctctcgacacg
gaaacatctaacataaattggaactattctatcggagaaacaattttagtaaaaattcaa
acagtgaacacagattcgggagaaataacactaagtgtggctaatcaggacatacaagat
gaaaaagcaacattccatattggtgaagaagtagcaggcacaataatagaatcatccact
caaggattatatttaaaaatcagtaaaaatgaaggacaaactgttagtacaggattttta
ccagctggtcacatgtcaccttgtatggagatagcagctttactagcatcaaaatatgtt
cctggtgatacactttcagctcttgtatttgccacagtacctagtttaattttaactagg
actttcgtaactcaaggaagatacaggaattttgaaaaactgaaaataggagactgtata
ccttgtacgatcaaagatatggagccagatggtataagactaattttaccagttgcagaa
tgcacgccatttggatatgtgtcctatagtaacgttagtaattttaatctactgcataca
aaccaaattttaatggcaaaaatatattctattaacaagaaaaaacaacaattaggacta
acattgtcgctaaagaaaatatacgatgatctatctgatcctaaaagtagaatggtggca
gcattggatacattgattctgtattttaataaattagtagaactttcaagaagttcatat
tacaaaaacagaccaattgcatctgtaaaattagggcagagagttactggaaagattgaa
aaaattacggctgatggtttggttgttcaattgcagaataacttgctaggtatagtgtct
aaggatcattactctgagaataaaaaaataggggacaaaatttctggaacgattatatgg
aaaaattacgtacatgagcttgtcgaattgaccacgttatcgtcaataatgcataaaata
agtgccaaacaagataagcaaatacaattccctgatggcaaattgctacgtggtagaatt
ttaatggtgacaaattggtttatcttgatattccttcaaggtattggtaaaggaacttta
gctgcgatacctgtacgtcgtcacataaatgatttacagccagatctaacaccttatact
attcattctaaaattaaatgttacgccttattaaattccgaagaatccgatattatgcct
ctctgcatcataaaatctgcatttgaaaagaagtattgtgtgagagagaaatcgggtgat
aataataacttaaaaagaaagaaacaaaatcaagagaacgtggtactcaccaaaaaaata
aaaattgaaaagttacaagaagtaccaaagatggaaagcaaagagaaacgaaacagagaa
aaaccagagaatgatttagaaaaggaatattcaaagacaatgtgtgatgaacaaacagga
gaagaaaggattaaactggaagatatcaaaccttccaaaaaaaatttgagatacgcactt
aaaaatgttaataatgatacggataacgagcagaggtcaaggacatctgcgtgtggattt
ttctgggatgacaaccctgatttaactctccttcaagataaagactcatctagcgatagt
gaagatgaaatagaggaaaaaccaaagctgaaaaataagaaattaagcgccgctgaacgt
cgagaacaagaaagacagaaggaacatgaaattcgtcaaagagaagaagcgctcgccaat
aacctattaccaaattctgtagatcaatttgacagattagttttagctagtccagacagt
tcaatagtatggttacagtatatggcataccatttacagacgacagaaatcgagaaagca
agagcagttgcgagaagagcggtgaaaacaattagtttcagggaagagaatgaaaaatta
aacgtttggaatgcttggttgaatttagagtctaaatatggaattcctgaatcattgaat
gatgtttttcaagaggcagtaaggtctaacgattcactaaaaatatacaatcacatgttg
actgttcatgtcgaggctggtaggcagatcgaactagagaaaacaattaatacaatgatt
ggaaaatttaaacatattcccgaaatatggtttaattgtggagaagctttggtaaaaatg
ggtttgaagaataaatcaagacatattatgcagagagcattgcaatctttgccagcatct
gaacatgtaaatctaatggcaaggtttgcgattatggagaacaaatttggggataaagag
agagcacaaactctgtttgagcaaattctaagttcctatccgaaacgggtggatatatgg
tcttgttatattgattccctagttaaatctaatgatattgatatagcaaggaaagttcta
gagagagcagttgctcagacattaccacctagaaagatgaagatcctgtttaaaaagttt
atcaattttgaagaacagcatggtactcaggaagacgtgattcgtgttcaacaaatggct
gtagaatatgtagagaagcagtgtacaaaatga
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