Bombus affinis (rusty patched bumble bee): 126928875
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Entry
126928875 CDS
T09368
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
baff
Bombus affinis (rusty patched bumble bee)
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
baff03009
]
126928875
Ribosome biogenesis [BR:
baff03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
126928875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
TOR1L1_C
Motif
Other DBs
NCBI-GeneID:
126928875
NCBI-ProteinID:
XP_050600687
LinkDB
All DBs
Position
1:complement(13444247..13453739)
Genome browser
AA seq
2788 aa
AA seq
DB search
MKNKPIRHKESNTFQFKTFTERVNEIDVDVFHRVAHRNEENDEEIETYFHQTLQKWNYLN
LTEGYCSFKKKVRDIVTLPQLVNQKQFVVDTLIEYLAKKDVLFLQPILELVVAMSKDLQK
DFYEYFPRFLTVIIELLKTKDIEQIEYTFTSLAYLFKFLWKYLVKNVKTVLDLLLPLLAD
TQPTYINNFAAESFAFVVRKIKDKDSFLKTILHILKSNPNIIPGCGKLLFEVISGIPGQF
HSCAEQMLLLYFNGLNNDSPNQSLMFKLLKEIINCMLQSIHSQKYQVLWSVLLNVMDKSI
EETKQFQSKTGKEKSLILLMQLINIIVNHRNGKVVIDPVPLIKKLSHILDTFENEENVLR
EVINVSVAILLAANVRLMQETSSQILLKVMSVKNIQLLYGAVESLIHYSSFETLVLPYII
RHSISIGFDDDTLQLFTKIVNAKVPLCLNGINLNKWTKYILDIRGVKSDSINYFQKELEV
LLGNSISTNALKMLIILPHLKPIPAEFKNILKRGILSLYKQILNDTNTETEMIKLCLTFL
ISLESAIHILESETLHQFIEENDIKVLDLIIKYPDNKFILNAVDLYVTYFSTSQYREMYI
NRTVFEDLNSSIAEKLSSPFSEIRLIVTHLYLLFSNISEVKLSITNEKKEIGVMEHIYLA
ECEPISVHSYRSKLLHLQALSYENEAMINLDLKYYELPLRYLLGNLYINFSLLWEPINKI
IATFAIREYEQFWPIFLTELKRNHEITVDYKPLFECTVISAIENAIQKCNDKPDYENHKI
LLWKCMTNFSHFCEMKNRDITGLFIDFVNYNFFKSNSEDARCCSILKGQESIVSNNNMEI
DEENESDNESAENQENEKEEKEKKEAIISTDTRMKQIDIESRQINKIVINKNYKVKLLLA
QLEVFEKITNPRTLYRESEMQNIYLDLLSSKVPDIQKGALNCLLTYKQKYLMPYKENLLS
IINERNMKNELTHFKVDKESNIILEEHRNDFIPILMRIIYAKMIAKTGMRTGGKAGGTLK
RKMILRFLSGIQENEMIIFTNMAFKPFKKYMLELDKMNDQQINLKQLTQTIINTVDLSNV
IPPKRLQSATNLLAILIEQFGSKMGKKLLPYLLGLVICILAEVTGILQKSDKVHVGFLQS
IKNVRSTSISILARFFGHFEDYEWNKYEMDALFNVAVFPWLEKLPIEGIHSPTPLLRLFM
AWSQNSRFYPLFIKYREDDKSVSSLPYIMKLLLGSKTETPVISAIVEMIEKMVTLQDYGK
TNENDMEVDTPFVPLTPILNNLSEINEEALSNGVNYGSTILLPHVFSILQYIKTKLEKST
KGINKSELVILSRISEFVKDAHACDILLTLTLPILTKKAGAGEGEETIIELITTTINLVK
QVKEPTTHVRAVLPLLGAISAIPARKLLLELYKTIVEKSTNDCHGILIKNYELISALNAW
DRRWLDQPDFQKRLDAFSEINNAIEKDEITLEFGIAIIYNCYYILKNEADLALRDNAGQC
LKLLGCKLAQKHKENVADRRYLMDNTILPLIRKGITSKIEIVRLQSIAFLGHLAMECSDV
HPVLRDLSVLTDKADPEVDFFENMQHLQLHRRARAFLKFCNIAKTLKKSFNPRTLTQFVL
PFASSYLCNEAFIHKNSLIDAAIGTVGTICKLLPWHQYEIILKHYLEKLRHSIEFQKQLV
RVIVSILDSFHFDLSKYKFVEESSVPKYNKEIERDHGKEIISDEKKEEESVAKGDDKNNE
NQVEEKLDESLNFENIDTVEETVGKIQNETQKEVPVMEKQIILSQNGARRVVFSISKELL
PQLHCSIIARTSRESSHKINKKRIAIDNEEEELMRVPIALAFVKLLQKLPGHILDTNLPG
IFMKLCTFLKSRLESVRRVTREILQKIMITLGPKYLHHLLREMNTLLTKGFQVHVLAFTV
QSVLVALKPYFQKFDINENLQSILSVCKVDLFGLTAEEKEVIGIVKNVSEAKSTKSYDIF
HILAQYITESCLVDLILPLKEVLIRSHSHKTVQKVVECFRNIVLGLADNIFIPLEQMLIF
LYGVISESIPEFKPEKNDKELTEKEVEILSRQKPDCFIIPPEPKNKMGIKATSKTSKNTN
VHIIMEFGLKLFHILLKRDKISNTEFKSLIDPFVPHISECIKSQHVKLSTLALQCLNWLL
KMDLLSIQETISDICSSIFIILHKYAAAGLSKGDNFDLVMAGFKCMSVIVRDVKQYVISI
DQLKALIMYAEQDMHNSDKQATAFGLLKAIIARKMILPEMHIVMEKVAALSITSELEHVR
VQSRSVFYSYLMEYPLGKHLQKHIAFYLTQVSYEMQPGRLSALEMIYSIVTGFPVKTLVL
KSDIIFIMVGVRLINDDDPTCRKLCAKCIKEMITRIPYNNRSKLFDILVAWLKDLKVMHR
TLGAQLCGIFVTVEKDTFKSRLDEILPLLLKQFHADFNDSNEPGRFVKLQTEKEMQLKKK
HYIKDPERMKDHHMFQVLQLLLKISANCTAFLKSEEYKNAIRSFAEYSQSLLAHPHAWVR
LAASQLIGFILAALDVDKIIDLLENPEKCEAETSYMYSDPTTVIKSLSLDLIAQLQPDMT
LEELADQTVKNLIFIARILKSVKQINTATDQVNEMKDKDKNQLSLPWLIRRLRKAVNIEI
TQAPKSITVRTAFFKWVGAVVATIPMEYLNVVLFNIMSPIVREISTTEEQNTTLRRLAKE
ASVMIKKRLDSEEYTRLLSRIQQNLDIKKAERKMMRTQQFVTDPELAAKRKIARQQKKKE
AKKRKSDRVTGKKRTKKHARKEVDLDII
NT seq
8367 nt
NT seq
+upstream
nt +downstream
nt
atgaagaataagccaattcgtcataaagaatcaaatacatttcaatttaaaacatttacc
gaaagagtaaatgaaattgatgtcgatgtatttcaccgagttgcacatcgaaatgaggag
aacgatgaagaaatcgaaacgtattttcatcaaacacttcagaaatggaattatcttaac
cttactgaaggttactgcagctttaaaaagaaagttcgtgatattgtaacgcttccacaa
ttggttaatcaaaagcagtttgtagtagatacattgatagaatatttagcaaagaaagat
gttttgtttctacaaccaatcttggaattagttgttgctatgtctaaagacctacaaaag
gatttttatgaatattttcctagatttttaactgttatcattgagttattaaaaacaaaa
gacatagaacaaatagaatacacattcacatcattagcctatttatttaaatttttatgg
aaatatctggttaaaaatgtaaaaactgtgcttgatctgttgctaccattgttggcagat
acacagccaacttatataaacaactttgcagctgaaagttttgcattcgtggtacgtaag
attaaagataaagattctttcttaaagacaatattgcatatattgaaaagtaacccaaat
ataataccaggatgtggtaaattattatttgaagtgatatctggtataccaggacaattt
cattcatgcgcagaacaaatgcttttattatatttcaatggattgaataatgattctcct
aatcaaagtttaatgttcaaattattgaaggaaattattaactgtatgctacaaagtata
cattcacagaaataccaggtactttggtctgtacttttaaatgtcatggacaaatcaatt
gaagagactaagcagtttcaatcaaaaactggaaaagagaaaagtctgattcttttgatg
caattgataaatataattgttaatcatagaaatggaaaagtggttatagatcctgtacct
ctgattaaaaaattgtcacatattttagatacttttgaaaatgaggaaaatgtgttacga
gaagttataaatgtatcagttgctattcttttggcagccaatgttagattaatgcaggaa
acatctagtcaaatactacttaaagttatgtctgtgaaaaatattcaactattatatggc
gctgttgaaagtttaatccattattcatcattcgaaactttggtattgccatatataata
cgacatagcatttccattggttttgatgatgatactttacaactgtttacgaagatagtt
aatgcaaaagttcctttatgtctcaatggtatcaatttaaacaaatggacaaaatacatt
ttagatataagaggtgtaaaatctgatagtattaactacttccagaaagagttagaagtt
ttattgggtaatagtatatcaacaaatgcattaaaaatgttaattattttgccacatctg
aagcctataccagcagaatttaagaatattttaaaaaggggaatattatctttatataaa
cagatattaaatgataccaatacagaaactgaaatgatcaaactatgtttgacattctta
atatctttagaatccgcaattcacatattggaatcagaaactttgcatcagtttatagaa
gagaatgatataaaagtattagatctaattatcaagtatcctgataataaattcatttta
aatgctgtagatttatatgtaacatattttagcacatcacaataccgagaaatgtatata
aatcgaactgtgtttgaagacttaaacagcagtattgcagaaaaattgagttcaccgttt
agtgaaattcgcttaatagtaactcatttatatcttttattctccaatattagtgaagta
aaattgtctattacgaatgagaagaaggaaataggtgttatggaacatatatatttagca
gaatgtgaacctatatcagtacatagttatcgaagtaaattgctgcatttacaagcattg
tcatatgaaaacgaagcaatgataaatttagatttgaagtattatgaacttccattacga
tatttactaggaaatctgtatataaatttttctttactttgggaacctataaataagatt
atagctacttttgcaatcagggaatatgaacagttttggcctatatttttaactgaatta
aaacgtaatcacgaaataactgtagactataaaccattatttgaatgtacagttatttct
gcaatagaaaatgctatacaaaaatgcaatgacaaaccagactatgaaaatcataaaatt
cttttatggaaatgtatgacaaatttttcacatttctgtgagatgaagaatagagatata
acaggactattcattgattttgtaaattacaacttttttaagtcaaattctgaagatgca
agatgttgcagtatcttaaaaggtcaagaatcaattgtttctaataacaacatggaaatt
gatgaagaaaatgaaagcgataatgaatctgcagaaaatcaagaaaatgagaaagaggaa
aaagaaaaaaaggaagctattatttctacagatacaagaatgaaacaaatagatatagag
tctagacaaataaataagattgtaataaataagaattataaagtgaagctcttacttgct
caacttgaagtatttgaaaagataacaaatccaagaacattatatagggaatcagagatg
cagaacatttatttagatttgctgtcatcaaaagttcctgacattcaaaagggtgcttta
aattgtcttctcacttataaacagaaatatttaatgccttataaggaaaatttgcttagt
ataattaatgaaagaaatatgaaaaatgaattgacacattttaaagtcgataaagaaagt
aatattatactggaagaacatcgcaatgattttatacctatattaatgcgtataatttat
gctaaaatgattgcaaaaacaggaatgagaactggtggtaaagctggaggtactttaaaa
cgaaaaatgatcttacgttttctatctggaattcaagagaatgaaatgatcatatttacc
aacatggcatttaagcctttcaagaaatatatgcttgaattagataaaatgaatgatcaa
caaattaacttgaaacaacttacacaaactattattaatactgtagatttgagtaatgtt
attccacctaaacgtttgcagagtgccacgaatttacttgcaattttgatagaacaattt
ggtagtaagatgggaaagaaattgttaccctacttacttggtttggtaatatgcattctg
gcagaagtaactggaattttacagaaatcagataaagttcatgttggattcttacaatct
attaaaaatgtaagatccacctccatttcaatattagcaaggttctttggtcactttgaa
gattatgaatggaataaatacgaaatggatgctttgtttaatgtagctgtatttccatgg
ttagagaaattacctatagaaggtattcacagtcctactccattactaaggctgtttatg
gcatggagccagaactcacgtttttatccgttatttataaaatatcgcgaagatgataag
tctgttagttctcttccttacataatgaaacttttattgggttcaaaaactgaaacacct
gttatcagtgctattgttgaaatgattgagaaaatggtaacactacaagactatggaaag
acaaatgaaaatgatatggaagttgatacaccttttgttcctttaacacctatacttaat
aatttatctgaaataaatgaagaagcattatctaatggagttaactatggatctactatt
cttctcccacacgtgttcagtattttacaatatattaaaactaaacttgaaaaatcaacc
aagggaataaataaatcagaacttgtgattttatcgcgtatttcagaattcgtgaaagat
gcacatgcatgtgatatacttcttactcttactttaccaatattaactaaaaaggctgga
gctggagagggagaagaaacgattattgaattgattacaaccacaataaaccttgtaaaa
caagtgaaggaaccaacaacgcacgtgcgtgcagttctacctttattaggtgcaatatct
gcaattcctgctcgtaaactcttgttggaactctataaaacaattgtggaaaagtctaca
aacgattgtcatgggatattaataaaaaattatgagttaataagtgcacttaatgcatgg
gatcgcaggtggctcgatcaaccagattttcaaaaaagactggatgcattttctgagatt
aataatgcaatagaaaaggatgagattacattagagtttggcattgctattatttataat
tgttattacattcttaaaaatgaagcagatctagcattaagagacaatgcaggacagtgt
cttaagctacttggttgtaaattggcacagaaacataaagaaaatgtagcagatagacgt
tatttaatggacaatacaattttaccacttataagaaaagggataactagcaaaattgaa
atcgtaaggcttcaatcaatagcttttttgggacatttggctatggaatgttcagacgtc
catcccgtcttacgggatttatctgtattaactgataaggcggatcccgaagtagatttc
ttcgagaacatgcaacatttgcaactgcacaggagagctcgagcatttcttaaattttgt
aatatagcaaaaacgttgaagaagtcgttcaatccgagaacattaacacagtttgtcctt
ccttttgcttcttcatatctatgcaatgaagcttttattcataaaaatagtcttatcgat
gctgcaataggaaccgttggtactatatgcaaacttctaccatggcatcaatatgagatt
attctgaaacattacttggaaaagctaagacattctatagaatttcagaaacaacttgtt
agagtcattgttagcattttagattctttccattttgatttgtcaaaatataaatttgta
gaagaatcttcagtaccaaaatataacaaagaaattgaaagggatcatggaaaggaaata
atttctgacgaaaaaaaagaagaagaaagtgttgcaaaaggtgacgacaaaaataatgaa
aaccaagtagaagagaaattagatgaatctttaaattttgaaaatatagatactgtggaa
gaaactgtaggaaaaatacaaaatgaaacacagaaagaagtacctgtgatggaaaaacag
atcattctttcacagaatggagcacgacgagtcgtatttagtatatccaaggaattgcta
cctcaactccattgttccattatagcgagaacgagtcgcgaaagtagtcacaagattaac
aagaaaagaattgcaatagataacgaggaagaagaactaatgcgagttccaattgctctt
gcttttgttaaattactacagaaattacctggacatattttagatactaatttaccagga
atctttatgaagttatgtacattcttgaaatctcgtttagaatctgtacgacgtgttact
cgagaaatattacaaaaaattatgataactcttggtccgaagtatcttcatcatctttta
agagaaatgaatactttattaacaaaaggatttcaagttcatgtcctcgcgtttacagta
caatcagtattagttgctctgaaaccatattttcagaaatttgatatcaatgaaaatctt
caaagtattttatctgtatgtaaagtagatctatttggattaacagcagaagagaaagaa
gtaataggaattgtgaaaaacgtatcagaagcaaaatctacaaaaagttatgacatattt
catatattagcacaatatattactgaatcatgtttggtggatttaatcttaccattaaaa
gaagtgcttataagaagtcattcgcataaaactgtgcagaaggttgtggaatgtttcaga
aacatagtactaggtttagctgataatatttttataccattggaacaaatgttaatattc
ctttatggtgtaatttctgaaagtattcctgagtttaagcctgagaagaatgataaagaa
ttaacagaaaaggaagtagaaatactcagtagacagaaaccagattgctttatcatacct
ccagaaccaaaaaataaaatgggtataaaggctacttcaaaaacttcaaagaacaccaat
gttcacattatcatggaatttggtttaaaacttttccatattctgttaaaaagagacaaa
atatctaatacagaatttaagtccctgatagatccatttgtaccacacataagtgaatgc
ataaaatctcaacatgtgaagctaagcacattagctttacagtgtttaaactggttactt
aaaatggatttactttcaatacaagaaacaatttctgatatttgttcatctatctttatt
atcttgcataaatacgccgcagctggcttaagtaaaggagataattttgatttagtgatg
gctggttttaaatgtatgtctgtaattgttcgtgatgtgaaacagtatgtaattagcata
gatcagttgaaagccttgattatgtatgctgaacaagatatgcacaacagtgataagcaa
gcaacagcatttggtttactcaaagcgataattgctcgaaaaatgattcttcctgaaatg
catattgttatggaaaaagttgctgctttaagcattacgtctgaactagaacacgttaga
gtacaatctcgctccgttttttattcttatctgatggaatatcctcttggtaaacattta
cagaaacatatagcattttatttgacgcaggttagctatgaaatgcaaccaggtcgtctt
agtgctttagagatgatttacagtattgttacaggatttccagtaaaaactctggtcttg
aagtcagatatcatttttataatggtgggtgtaagattgataaatgatgatgatccaaca
tgtcgcaagttgtgcgctaaatgtattaaggaaatgattacacgtataccttataataac
agaagcaaactttttgatatacttgtagcgtggttaaaagatcttaaggtaatgcatcga
acattgggtgctcagttatgcggtatatttgtaacagtagaaaaggacacttttaagtct
cgtttagatgaaatattaccgcttcttttgaaacaatttcatgcagattttaatgatagc
aatgaacctggtcgttttgtgaagttacaaacagaaaaggaaatgcaattaaagaaaaag
cattatatcaaagatccagagagaatgaaagatcatcatatgtttcaagtgttgcaattg
ttactaaaaatatcggcaaattgtacggcatttctcaaaagtgaagaatataaaaatgct
attcgttcatttgctgaatatagtcagtccttattagcacatcctcatgcatgggtgcgt
ttagcagcgtctcaactgatcggatttattttagctgctcttgacgttgataaaattata
gaccttttagaaaaccctgaaaaatgtgaagcagaaaccagttacatgtattccgatcct
actaccgttataaaaagtttaagtttagacctaattgcgcaactacagcctgatatgacg
ttagaagaattagccgatcagactgttaaaaatttaatttttatcgcgagaatattaaag
tctgtaaaacagattaatactgctacagatcaagtcaatgaaatgaaagataaagataag
aaccagttatcacttccttggcttattagaaggctgagaaaggctgtaaatatagaaata
acccaagctcctaagtcaataacagtgcggactgctttctttaagtgggttggcgctgtt
gtggctacaatacccatggaatatttaaatgtggtacttttcaatattatgtcaccaatt
gtgcgtgaaatatctactacagaagaacaaaataccactttaagacgattagctaaagaa
gcaagtgtgatgattaagaaacgattagatagcgaagaatatactagattattgagtcga
atacaacagaatttggatattaaaaaagcagaaagaaagatgatgcgtacgcagcagttt
gtaacggatccagaattagctgccaaacgtaaaattgcaagacagcagaaaaagaaagaa
gctaaaaaaaggaaatctgacagagtgacagggaagaaaaggacgaaaaaacacgcaaga
aaagaagtcgatttggatattatataa
DBGET
integrated database retrieval system
