Borreliella afzelii HLJ01: BafHLJ01_0423
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Entry
BafHLJ01_0423 CDS
T02298
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bafh
Borreliella afzelii HLJ01
Pathway
bafh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bafh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BafHLJ01_0423 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bafh03021
]
BafHLJ01_0423 (rpoB)
03400 DNA repair and recombination proteins [BR:
bafh03400
]
BafHLJ01_0423 (rpoB)
Enzymes [BR:
bafh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BafHLJ01_0423 (rpoB)
Transcription machinery [BR:
bafh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BafHLJ01_0423 (rpoB)
DNA repair and recombination proteins [BR:
bafh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BafHLJ01_0423 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AFU74684
LinkDB
All DBs
Position
complement(401954..405421)
Genome browser
AA seq
1155 aa
AA seq
DB search
MIKRVHLGQGRADEILDLPNLIEIQLNSYEKFLQLDKLKNKKPLLNEGLESVFRNIFPIK
SGNGDVALEYERYYIENDTLNFTEKECKRKGQSYEAVLKVRLNLQFLTTGEIRQKDVYMG
TIPLMTERGTFIINGAERVIVSQIHRSPGVVFYKEKDLYSARIIPYRGSWLEFEIDSKKD
YLYVKIDRKKRILITLFLRALGFDTREKIIETFYNIKKIKVEEGTKRDLPGQYLAKSINI
RENMYYRAGDKITLQDVEDFLQNGVNEIELVDFDGYNDVSGKYFVSSNVILNCLEKEDAF
FALKDGSKELPKESVMLAVYGALFPGEPISIDNAENDLKTIFFSERRYDLGRVGRYKLSK
KFGSDDLSTSVLTMDDIVNTISHLLRIYEGHDILDDIDHLGNRRVRSVGELLTNIYKGAM
SRVEKIAKDRMSNKEVFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKR
RLNALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYSRVNDYGFLE
TPYRKVVNGEVTNELEYLSAIDEEKKCIAQANAAFNSDGKYLEDLVSVRISGDYTTTNPK
NIDYMDVSPRQLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPKPPIVGTGMESVV
AKDSGVVVKAKRSGEVILATSNKIVVKPFESENAKDLDEYHIVKYERTNQDTCFNQSVLV
KEGQKVERGEIIADGPATRYGELALGNNLLLGVIPWNGFNYEDAILISDRIVKEDLYTSI
HIKEFSIEVRETKLGPEKVTGDIPNVSEKILNKLDENGIIRIGTYVKPGDILVGKVTPKS
EGDITPEFRLLTSIFGEKAKDVKNNSLKVPHGTEGTVIDVQRITKEDVGNLSPGVEEILK
VYVAKKRKLKEGDKMAGRHGNKGVVAKILPVEDMPYLADGTPLDICLNPLGVPSRMNIGQ
LMESQLGLAGKYLSESYNVPVFESATNEQIQEKLKKAGFNPTSKEILYDGYTGEPFENEV
MVGVIYMLKLHHLVDDKMHARSTGPYSLVSQQPLGGKAQFGGQRLGEMEVWALEAYGAAH
TLQELLTVKSDDMSGRVKIYENIVKGVPTNVSGIPESFNVLMQELRGLGLDLSIYDDNGN
QVPLTEKEEELINKS
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagagttcatctgggacaaggaagagctgatgagattttagacttacctaac
ctgatagaaatacaattaaattcttatgaaaaatttttacaacttgataaattaaaaaat
aaaaaacctttacttaatgaaggccttgagtctgtttttagaaatatatttcccatcaaa
agtggaaatggtgacgttgctcttgagtacgaaagatactacatagaaaatgatactctt
aattttacagaaaaagaatgtaaaagaaaaggtcaaagttatgaagctgttttaaaagta
agactaaatttgcaatttttgactactggggaaataaggcaaaaagacgtgtacatggga
actattcctttaatgacagaaaggggcacttttattattaatggggctgagagggttatt
gtttctcagattcatagatccccaggagttgttttttataaagaaaaagatttatattct
gctagaataattccctatcgtggttcttggctagaatttgagattgattctaaaaaagat
tacctttatgtaaagatagatagaaaaaaaaggatactcataactctttttttaagagct
ttagggtttgatacgagagaaaaaataatagaaactttttataacattaaaaaaattaaa
gttgaagagggtacaaaaagagatcttccaggtcaatatttagctaagagtattaacata
agagagaatatgtattatcgagcaggagataagattactctacaagatgttgaagatttt
ttacaaaatggagtaaatgaaatagagcttgttgattttgatggctataatgatgtttct
ggaaagtactttgtaagttcgaatgttattttaaattgccttgagaaagaggatgctttt
tttgctttaaaggatggctctaaagagcttccaaaagaatcagtcatgcttgctgtttat
ggggctcttttccctggcgagccaatatcgattgataatgctgaaaacgatttaaaaacc
atattcttttctgaaagaagatatgatcttggacgtgtagggcgctataaactttctaaa
aaatttggatctgacgatttaagtacatcagttttaactatggatgatattgttaacacc
atatcccatcttttgagaatatatgaaggtcatgatattcttgatgatattgaccatttg
ggaaatagaagagtgcgttctgttggcgagcttcttaccaatatatataaaggagcgatg
tcgagagttgaaaaaattgctaaagatagaatgtctaacaaagaagtttttaatctaaaa
cctcaagaattaataagcgttaaacccattgtatctgctgttaaagaattttttgcaacc
agccagctttctcagttcatggatcaggtcaatcctttagccgaacttactcacaaaagg
cgtcttaatgctcttggtccggggggactttcaagagatagagcaggatttgaagtaaga
gatgtacattatactcattatggtagaatgtgtcccattgaaactcccgaaggaccaaat
attggacttattgtttctttagctacttattccagagttaatgattatgggtttttagaa
accccctataggaaagttgttaatggagaagtgactaatgaattagaatatttatctgct
attgacgaagagaaaaagtgtattgctcaagccaatgctgcttttaattctgatggaaag
tatcttgaagatttggtttctgttagaatttctggtgattataccacaacaaaccctaaa
aatatagattatatggacgtttctcctagacaattaatctcagtatcttcggcattaatt
ccttttcttgaacacaatgatgcaaatagagctcttatgggctctaatatgcaaagacaa
gcagtgcctctgcttttccccaaacccccaattgttggtactggcatggaaagtgttgtt
gcaaaggattcaggagtagtagttaaggctaaaagaagtggggaagttattcttgcaaca
agtaataaaatagttgtcaaaccttttgaatcagagaatgctaaagatttagatgaatat
catattgttaagtatgaaaggacaaatcaagatacttgttttaatcaatctgttttagtt
aaagaggggcaaaaggttgaaaggggtgaaataatagctgacggtcctgctactagatat
ggggagcttgctcttggcaataatttattactgggagttattccttggaatggatttaat
tatgaggatgctatattgatttctgatagaattgtaaaggaagatctttatacatctatt
catattaaagaattcagtatagaagtaagagaaactaagcttggtcctgagaaagttaca
ggagacatacctaatgttagcgaaaagatactcaataaattggatgaaaatgggattata
cggataggaacttatgtaaagcctggggatattttggttggcaaggttactccaaagtca
gaaggagacattactcctgaatttaggcttttaacttccatttttggagaaaaagcaaaa
gatgttaaaaataattcgttaaaagttcctcatggtactgaaggtacagttattgatgtt
caaagaattactaaagaggatgttggcaatctttctcctggagttgaggagatacttaaa
gtttatgttgctaaaaaaaggaagcttaaagagggtgataaaatggctggacgacatggt
aataagggtgttgttgcaaaaattcttcctgttgaagatatgccttatcttgcagacgga
acccctcttgacatatgcttaaatcctttgggagttccgtctagaatgaatattggacaa
ttaatggaatcgcaattaggtcttgctggtaaatatcttagtgaatcttataatgttcct
gtttttgaatctgctacaaatgaacaaattcaggaaaaattaaaaaaagctgggtttaat
ccaacttctaaagaaattttatatgatggttatacaggagagcctttcgaaaatgaagta
atggttggagtgatttacatgcttaagctacatcaccttgttgatgataaaatgcatgca
agatcaacagggccatattctcttgtttctcaacaacctcttggaggaaaagctcaattt
ggcgggcaaagacttggagaaatggaggtttgggctcttgaagcttatggtgcggctcac
acacttcaagaacttttaacagttaaatccgatgatatgtcgggcagagtcaagatatat
gaaaatatagtaaaaggtgttcctactaatgtatcagggattcccgagtcttttaatgtg
ctaatgcaagagcttagggggcttggacttgatttgtcaatttatgatgataatgggaat
caagttcctttgacagaaaaagaggaagaattgattaataaaagctag
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