Borreliella afzelii HLJ01: BafHLJ01_0782
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Entry
BafHLJ01_0782 CDS
T02298
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bafh
Borreliella afzelii HLJ01
Pathway
bafh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bafh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BafHLJ01_0782 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bafh03021
]
BafHLJ01_0782 (rpoD)
Transcription machinery [BR:
bafh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BafHLJ01_0782 (rpoD)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r1_1
Sigma70_r3
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AFU75014
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Position
749999..751630
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AA seq
543 aa
AA seq
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MSDLEKKYSKLIESIITHVGDRKSLSFSELSNLLPDDILEPEILDCICSVLEDRGIRLVN
KISELDLVGTEDGNDEEEEVEIASDRSFMVLDDGFQSDEEDVDIDVKLDDCDEEGISIKD
DLGSGYIKSNVLKDSHSEDPIKLYLKEIGKEFLLTGNQEVELAKQMDSGESIIENILKNE
GLVIENYYNLVNTIYSRMEREEFFKREKDRDKESSPDYYNKKKRIASFYKIPLKPVQDRL
ISYVDNKHRVYELGGDIFEKNLKKERLALKELLRDIPLYQDELRIFSDDYIDSANKIKDL
QRQQRIILSRLKIEKIRDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKEL
ERIEMYYEYPMDKIISMSEEIAKGKQMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDL
VQEGNIGLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLN
RETRYLVQVLGKDPTDEELSDRLGWELKKVKTVKSVQESLFLLKHQLGKRKILFLVILLR
IRQ
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
ttgtcggatttggaaaagaaatattcgaagctaatagagagtattattactcatgtagga
gatagaaaatctcttagttttagtgaattatcaaatttacttcccgatgacatattagaa
ccagagatccttgattgtatttgttcagtacttgaggatagaggaataaggttggttaat
aaaatttcagaattagatctggttggcaccgaagatggaaatgatgaagaggaagaagtg
gagattgcatctgatagaagctttatggtcttagatgatggttttcaaagtgatgaagag
gatgttgatattgatgtcaagcttgatgattgtgatgaagaaggcatttctattaaggat
gatttgggttcagggtatattaaaagtaatgttttaaaagatagtcactcagaagatcca
ataaagctttatttaaaggaaataggaaaagagttcttattaacaggaaatcaagaagtt
gaacttgcaaagcaaatggattctggggagagtataattgagaatattcttaaaaatgag
ggacttgttatagaaaactattataatcttgttaatactatttattcaagaatggaaagg
gaagaattttttaaaagagaaaaagatagggataaagagagtagccctgattattataat
aaaaaaaaaagaattgcctctttttacaaaattcctttaaaaccagtccaagatcgttta
ataagttatgtagataataagcatagggtgtatgagcttgggggtgatatttttgaaaag
aatttaaaaaaggaaagattagccttaaaagagcttttacgagacattcctttatatcaa
gatgagctaaggattttttcagatgattatattgactctgctaacaaaataaaggatttg
caaagacaacaaagaataattctaagcaggttaaaaattgaaaaaataagagatttaagg
gtgcttggaagagatttgactattgctgaaaaaaagatagagatagaaaaatctcttaaa
ctaaaagaagatgctattaaagagcaaattacagaagctcagcttgctcaaaaagaactt
gagagaattgaaatgtattatgaatatccaatggataaaataataagtatgtcagaagag
attgctaaagggaaacaaatgatgcaacatgctaaagatcagttgattaaggctaattta
aggcttgttgtaagcattgccaaaaaatatgcaaatagaggacttcatttttttgacctt
gttcaagaaggtaatattggattaattaaagctgttgaaaagtttgaatataaaaggggt
tttaagttttcaacttatgctacttggtggattagacaggccataacaagatctatttcc
gatcaagctcgcacaattagagttcctgtacatatgattgaacaaataaataggcttaat
agagaaaccagatatttggttcaagttttggggaaagaccccacagatgaagagctctca
gatagacttggatgggagcttaaaaaggttaaaactgtaaaaagtgttcaagagagcctg
tttctcttgaaacaccaattggggaagaggaagattctgttcttagtgattttattgagg
ataaggcaataa
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