Borrelia afzelii (Maryland): BafPKo_0645
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Entry
BafPKo_0645 CDS
T02093
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bafz
Borrelia afzelii (Maryland)
Pathway
bafz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bafz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BafPKo_0645 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bafz03400
]
BafPKo_0645 (mfd)
Enzymes [BR:
bafz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BafPKo_0645 (mfd)
DNA repair and recombination proteins [BR:
bafz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BafPKo_0645 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
UB2H
Cas3-like_C_2
AAA_22
TsaE
NdhM
Motif
Other DBs
NCBI-ProteinID:
AEL69843
UniProt:
Q0SMN2
LinkDB
All DBs
Position
complement(652732..656106)
Genome browser
AA seq
1124 aa
AA seq
DB search
MNIDEELTTILQNNSNLKKMKEYLEQNTFFSLTGYEGFFKAFLIKKIKEYSKTGKIILIV
KDEHTLDKIKNDLKVITNQIFEFNYFSPLVYKGIGSKSTIFNERIKFLINFYKKNPGIYI
TVLKSLLSKIPNQNTLLKNIYKIEKNTKIDTVDIEKTLITLGYEKTLRVTIPGEFTIKGE
IIDLYPFGEQNPIKIVLNFDKIEEIRKFNPLTQLKQDNEILELQILPKKEIIWKNEVINN
LKTKIKSVEYKKILEELNLKKETKTEEMFYPLVANTYLSDEIEKHTPIVSFEINNFEKEI
EKIHQEYENLYKEAKEAGKNTIDPKRILLNSKDFNLKSDVLFSKIESSKSKEVIEFKIES
KRSFFSNIMLTKEEFKNWLKNGFKIIIAAESESQKEKLKYIFKELPKVSIEVLKISSSLI
IEEEKIAIILESNIFNTEQKINKSFESSKTKAIASFIEIEKNSHVVHINHGIGIFRQIKR
IKTSSLEKDYIEIEYAEGERLFIPIEQTNLIQKYIGSDPKNIKLDKIGSKTWIKNKVNAK
KRIEEIAEKLIELYSKRESIKGIKYPKDNELQLLFESEFPYDETPDQITAIKEIKEDMMS
FKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVVVLSPTTILAEQHFNTFKKRFKNFPI
KIEVLSRFIKNNSEKRILKELKSGEIDIIIGTHKILSKKFSCKNLGLIIIDEEQRFGVKE
KEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPKNRVKIEAYLESFSELLI
KHAIENELSRDGQVFLVNHNIEELHYLKTLIEKLTPYARIAIIHGKLTGIEIENIMHDFI
KKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLYQLKGRVGRGSKKAYAYFLYQD
SEKLNERSIERLRAITEFSDLGSGFKIAMKDMEIRGVGNLLGREQHGEIESIGLDYYLTM
LNKAIEKKMGKISSEEEVDIEINYSGFIPDNYIKNEQTKILIYKKIFEIQTEEESKKIRS
EIHDNFGPIPKEINSLLMLAELKILAKKLNIIKIKETNKTLEIEYKNIESIPMEKIIEIL
QKHPNLLILNPSYQKSIFLSFKNIEKSDKMNYIYKNINLLKTSS
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagatgaagaactaacaacaatattacaaaataattccaatttaaaaaaaatg
aaagaatatttagaacaaaatacatttttttcattaacaggatatgaaggatttttcaaa
gcttttttaattaaaaaaatcaaagaatatagtaaaaccggaaaaataatattaatagtt
aaagatgagcatacattagataaaatcaaaaatgatttaaaagtaattacaaatcaaatc
tttgagtttaactattttagtccccttgtatacaaggggattggctcaaaaagtacaatc
tttaacgaaagaatcaaattcctgatcaatttttataaaaaaaatcctggaatatatatt
acagtcttaaaatcattgctcagtaaaatacctaatcaaaatacactactaaagaatata
tataaaattgaaaaaaatactaagattgatacagtagacattgaaaaaacccttataaca
ttaggatatgaaaaaacactcagagtaacaattccaggagaatttacaataaaaggagaa
attatagacttatacccttttggagaacaaaacccaataaaaattgtactcaacttcgac
aaaatagaagaaataagaaaattcaatcctttaacccaattaaaacaggataatgaaatt
ttagaattgcaaattcttccaaaaaaagaaattatttggaagaatgaagttattaacaac
ttaaaaacaaagattaaatctgttgaatataaaaagattcttgaagagttgaatttaaaa
aaagaaacaaaaacagaagaaatgttttatccgctagtggcaaatacttatttaagtgat
gagattgaaaaacacacgcctattgtaagctttgaaattaacaatttcgaaaaagaaatt
gaaaaaatacaccaagaatatgaaaatctttataaagaagcaaaagaagctggtaagaat
acaattgatccaaaaagaatcctcttaaattccaaagacttcaatctaaaaagcgatgtt
ttattttcaaaaattgaaagttctaaatccaaagaagttatagaatttaaaattgaaagc
aagagaagctttttttcaaatattatgcttacaaaagaagaattcaaaaattggctaaaa
aatggatttaaaattattattgcagcggaatctgaatcacaaaaagaaaaacttaaatat
attttcaaagaattaccaaaagtatctattgaagttttaaaaatatctagctctttaata
atagaagaagaaaaaattgctattattcttgaatcaaacatctttaatacagaacaaaaa
ataaacaaatcctttgaatcttcaaaaacaaaagctattgcctcttttattgagattgag
aaaaatagtcatgtagttcatataaaccatggaattggtatatttaggcaaataaagaga
ataaaaacaagctctcttgaaaaggactatattgagattgaatacgctgaaggagaaaga
ctatttattccaattgaacaaacaaatttaatccaaaaatacattggaagtgatcctaaa
aatataaaattggataaaattggttctaaaacatggataaaaaataaagtaaatgcaaaa
aaaagaatcgaagagattgcagaaaaattaatagaactttattcaaaaagagaaagtatt
aaaggtattaaatacccaaaagataacgaattacaattgttatttgaatctgaatttcca
tatgatgaaactccagatcaaataacagcaataaaagaaattaaagaagatatgatgagt
ttcaaagtaatggatcgccttctttgtggagatgttggatttggaaaaactgaagtcgca
atgagagctgcgtttaaagctgtaatgggaaacaaacaggttgttgtactctccccaaca
actatcctggcagaacagcatttcaatacatttaaaaaaagattcaaaaacttcccaatc
aaaatcgaagtattaagcagatttataaaaaacaactcagaaaaacggattttaaaagaa
ttgaaaagcggagaaattgatataataataggaacacacaaaattctttcaaaaaaattc
tcctgcaaaaatttaggattaataataattgatgaagagcaaagatttggtgtaaaagaa
aaagaaaaacttaaagaaataagaatctcagttgattgtcttgctctttctgcaacacca
attcccaggtctcttcatatgtcgctaattaaacttagagatatttccgttttaaaaatt
cctcctaaaaacagagtaaaaatagaagcttatttagaatcgtttagtgaacttttaata
aaacatgcaattgaaaatgaactatctagagatggtcaagtttttttagtaaatcataat
attgaagagttgcattatttaaaaactctaattgaaaaattaactccttatgcaaggatt
gcaataattcatggaaaactcacaggaatcgagattgaaaacataatgcacgattttatt
aaaaaagcgtatcaaattttattagcaacaacaataattgaaaatgggatagacattcca
aatgcaaatacaataataattaacaatgcaaacaagtttggacttgcgcaattatatcaa
ctaaaaggaagagttggaaggggatccaaaaaagcttatgcttattttttataccaagat
agcgagaaactcaatgaacgctctattgaaagactaagagcaataaccgaattttcagat
ttaggatcaggatttaaaatagcaatgaaggatatggaaataaggggtgttggaaatttg
cttggtagagaacaacatggagaaattgaatcgattggattggattactatttaacaatg
ttaaacaaggcaattgaaaagaaaatgggaaaaatatcatcagaagaagaagttgacatt
gaaattaactatagtggctttattcctgacaattatataaaaaatgaacagactaaaata
ctaatctacaaaaaaatctttgaaattcaaactgaagaagaaagtaaaaagataagatca
gaaatccacgacaactttggcccaatacctaaagaaataaatagtctattaatgttagct
gaacttaaaattttagcaaaaaaattaaacataataaaaataaaagaaacaaacaaaact
ttggaaatagaatataaaaatatagaaagcatccctatggaaaaaataatagaaatactt
caaaagcatcctaatttattaatattaaatccatcgtatcaaaaatcaatatttttaagc
tttaaaaatattgaaaaatctgacaaaatgaattacatatataaaaatattaacttgcta
aaaacaagctcatag
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