Borrelia afzelii (Maryland): BafPKo_0736
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Entry
BafPKo_0736 CDS
T02093
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bafz
Borrelia afzelii (Maryland)
Pathway
bafz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bafz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BafPKo_0736 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bafz03021
]
BafPKo_0736 (rpoD)
Transcription machinery [BR:
bafz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BafPKo_0736 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
AEL69929
UniProt:
Q0SME4
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Position
750469..752364
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AA seq
631 aa
AA seq
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MSDLEKKYSKLIESIITHVGDRKSLSFSELSNLLPDDILEPEILDCICSVLEDRGIRLVN
KISELDLVGTEDGNDEEEEVEIASDRSFMVLDDGFQSDEEDVDIDVKLDDCDEEGISIKD
DLGSGYIKSNVLKDSHSEDPIKLYLKEIGKEFLLTGNQEVELAKQMDSGESIIENILKNE
GLVIENYYNLVNTIYSRMEREEFFKREKDRDKESNPDYYNKKKRIASFYKIPLKPVQDRL
ISYVDNKHRVYELGGDIFEKNLKKERLALKELLRDIPLYQDELRIFSDDYIDSANKIKDL
QRQQRIILSRLKIEKIRDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKEL
ERIEMYYEYPMDKIISMSEEIAKGKQMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDL
VQEGNIGLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLN
RETRYLVQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGEEEDSVLSDFIE
DKAIKNPANHTSFVVLQDQIRAILGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTR
ERIRQIESKALRRLKNPKKTQKLKDYLEDLN
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
ttgtcggatttggaaaagaaatattcgaagctaatagagagtattattactcatgtagga
gatagaaaatctcttagttttagtgaattatcaaatttacttcccgatgacatattagaa
ccagagatccttgattgtatttgctcagtacttgaggatagaggaataaggttggttaat
aaaatttcagaattagatctggttggcaccgaagatggaaatgatgaagaggaagaagtg
gagattgcatctgatagaagctttatggtcttagatgatggttttcaaagtgatgaagag
gatgttgatattgatgtcaagcttgatgattgtgatgaagaaggcatttctattaaggat
gatttgggttcagggtatattaaaagtaatgttttaaaagatagtcactcagaagatcca
ataaagctttatttaaaggaaataggaaaagagtttttattaacaggaaatcaagaggtt
gaacttgcaaagcaaatggattctggggagagtataattgagaatattcttaaaaatgag
ggacttgttatagaaaactattataatcttgttaatactatttattcaagaatggaaagg
gaagaattttttaaaagagaaaaagatagggataaagagagtaaccctgattattataat
aaaaaaaaaagaattgcctctttttacaaaattcctttaaaaccagtccaagatcgttta
ataagttatgtagataataagcatagggtgtatgagcttgggggtgatatttttgaaaag
aatttaaaaaaggaaagattagccttaaaagagcttttacgagacattcctttatatcaa
gatgagctaaggattttttcagatgattatattgactctgctaacaaaataaaggatttg
caaagacaacaaagaataattctaagcaggttaaaaattgaaaaaataagagatttaagg
gtgcttggaagagatttgactattgctgaaaaaaagatagagatagaaaaatctcttaaa
ctaaaagaagatgctattaaagagcaaattacagaagctcagcttgctcaaaaagaactt
gagagaattgaaatgtattatgaatatccaatggataaaataataagtatgtcagaagag
attgccaaagggaaacaaatgatgcaacatgctaaagatcagttgattaaggctaattta
aggcttgttgtaagcattgccaaaaaatatgcaaatagaggacttcatttttttgacctt
gttcaagaaggtaatattggattaattaaagctgttgaaaagtttgaatataaaaggggt
tttaagttttcaacttatgctacttggtggattaggcaggccataacaagatctatttcc
gatcaagctcgcacaattagagttcctgtacatatgattgaacaaataaataggcttaat
agagaaaccagatatttggttcaagttttggggaaagaccctacagatgaagagctctca
gatagacttggatgggagcttaaaaaggttaaaactgtaaaaagtgtttcaagagagcct
gtttctcttgaaacaccaattggggaagaggaagattctgttcttagtgattttattgag
gataaggcaataaaaaatcctgcaaatcacacatcctttgtagttttgcaagatcaaata
agagcaattcttggaactcttcctgaaagagagcaagaagttgtgaaaatgagatttggg
cttgaagatggttattctttaactcttgaagaggttgggcttcattttaatgttacaaga
gaaagaattaggcaaattgaatctaaggcattaaggcggcttaaaaatcctaaaaaaact
caaaaattaaaagattatcttgaagatttaaattga
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