Heyndrickxia coagulans 36D1: Bcoa_1387
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Entry
Bcoa_1387 CDS
T01628
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bag
Heyndrickxia coagulans 36D1
Pathway
bag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bcoa_1387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bag03019
]
Bcoa_1387
03400 DNA repair and recombination proteins [BR:
bag03400
]
Bcoa_1387
Enzymes [BR:
bag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bcoa_1387
Messenger RNA biogenesis [BR:
bag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bcoa_1387
DNA repair and recombination proteins [BR:
bag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Bcoa_1387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Sigma70_r4_2
Helicase_Sgs1
GerE
HTH_23
HTH_28
HTH_29
HTH_38
Motif
Other DBs
NCBI-ProteinID:
AEP00593
UniProt:
G2TIX0
LinkDB
All DBs
Position
1502927..1505101
Genome browser
AA seq
724 aa
AA seq
DB search
MAAMDKARQVLKQYYGYDHFRRGQEAIISQIMDGKDTLGMMPTGGGKSVCYQVPAMLLPG
VTLVISPLISLMKDQVDTLENIGIPATYVNSSLNPAEIDERLAAASTGAYKLIYLAPERL
EFSPFLHLLENINVSLIAVDEAHCISQWGHDFRPSYRLIEKLISQFKPKPVTLALTATAT
PQVKEDICRLLMIPEENTVATGFARENLHFQVVKGQNRDAFVLDYILKNANQSGILYTAT
RKETERIYNFLVKNGIRAGKYHAGMKEAERDSFQDRFLYDDISVMVATSAFGMGIDKSNV
RFVIHYNLPKNMEAYYQEAGRAGRDGEESDCILLFAPQDIHTQTFLIEQSANEDRKPGEY
AKLRKMLDYCHTEGCFQQFILHYFGEKETQPCGKCGNCLDTRAKTDVTKEAQMVFSCVKR
MQERFGKTMIAKVLAGSNDQKIRQFGFDKLSTFGIMKDKTQKEVAELIDFLTADGFLRAK
DGTYPVLMLTKKAVEVLLSKKQVFRKESVRAQQIASDNLLFEKLRTLRKEIADREKIPPY
IVFSDQSLREMSARMPITREAFLQVKGVGERKVEQYAELFMRVIRTYMEEEGIQAQAQPK
ALPHTKKVHEDGKEKSHHVTYRLLQEGKTIREIAEIRGMSERTIETHVIKCSDEGFPVEW
SRFIPERYRERIADAINRAGSGRLTPIKELLPDEVSYFMIRAFLQERKHHAEQEKPASYI
SGGD
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
gtggcagcaatggataaagccagacaggttttaaaacaatattatggctatgaccatttt
cgccgcgggcaggaagccattatcagccagatcatggatggcaaggatacattgggcatg
atgccgaccggcgggggaaagtcggtttgctaccaggtgccggccatgcttttaccaggg
gtcacgcttgtcatttcgccgctgatttccttgatgaaagaccaggtggatacactggaa
aacatcgggataccggcaacatatgtgaacagctccctgaatccggcagaaatcgatgag
cggcttgcggctgcatcaacaggcgcatacaaattaatctatctcgcaccggaacggctc
gaattttctccttttttacatcttctcgaaaacatcaatgtctcccttattgctgttgat
gaagcgcattgtatctcacaatggggtcacgacttccgcccaagctaccgtttaatcgaa
aaattgatttcccaattcaagccaaagccggtgacgcttgctttaaccgctaccgcaacg
ccgcaggtaaaggaagacatttgccggctgcttatgattccggaagaaaacacggtggcg
acaggttttgcccgtgagaacctgcattttcaggtggtgaaaggccagaaccgcgatgcc
tttgtactggactacatcctgaaaaatgcaaaccagtccgggatactttacacggcaacg
agaaaagagaccgaacgcatttacaattttcttgttaaaaatggcattcgtgcgggaaaa
tatcatgcagggatgaaagaagcggagcgcgacagctttcaggaccggtttttatacgat
gatatttccgtcatggtcgccacttccgcgttcggaatggggattgataaaagcaatgtg
cggtttgtcatccattataatttgccgaaaaatatggaggcgtattaccaggaagcagga
cgggccgggcgcgacggggaggaaagcgactgtattttgctgtttgccccccaagatatc
catacgcaaacttttttaatcgagcagtcagcaaatgaagacagaaaaccgggcgagtat
gccaagttacgaaaaatgctggactactgccatacggaaggctgttttcagcagttcatt
ttgcattatttcggcgagaaagagacacagccatgtggtaaatgcggcaactgcctggat
acccgcgcaaaaacagacgtgacaaaagaagcgcaaatggttttttcctgtgtcaaaagg
atgcaggaacggttcggcaaaacgatgattgcaaaagtactggccggatcaaacgaccag
aaaatcaggcaattcggttttgacaagctgtccacttttggcattatgaaagacaaaacg
caaaaagaagtggcagaactgattgattttctgacagctgacggttttttgcgtgccaaa
gacggtacatacccggtgcttatgctgaccaaaaaggcagtggaagtcctgctttcaaaa
aaacaggttttccggaaagaaagtgtcagggcgcagcaaattgcatccgataacctttta
ttcgaaaaactgcggacacttcgcaaagagattgctgaccgtgaaaaaataccgccttat
attgtcttttccgaccagtcgctaagggaaatgagtgccagaatgcctataaccagggaa
gcgttcctgcaggtgaaaggggttggggaaagaaaggtggaacagtacgccgagctgttt
atgcgcgtgatccggacttacatggaagaagaagggatacaagcacaagcgcagccgaaa
gcattgccgcatacaaaaaaggtgcatgaagacgggaaagaaaaaagccatcatgtgaca
taccgcctgttgcaagaaggaaaaacgatccgtgaaatcgcggaaatccgcggcatgtcg
gaaagaacgattgaaacgcatgtgatcaaatgttcagacgagggatttccggtagaatgg
agccgctttattcccgaaaggtaccgggagcgaatcgcggatgccataaaccgggcaggt
tccgggcggctaacgccgataaaggaattgttgccggatgaggtcagttattttatgatc
cgggccttcttacaggaaaggaagcatcatgcggaacaagaaaaaccagcatcatatata
tctggaggggattga
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