Heyndrickxia coagulans 36D1: Bcoa_2929
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Entry
Bcoa_2929 CDS
T01628
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bag
Heyndrickxia coagulans 36D1
Pathway
bag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bcoa_2929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bag03019
]
Bcoa_2929
03400 DNA repair and recombination proteins [BR:
bag03400
]
Bcoa_2929
Enzymes [BR:
bag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bcoa_2929
Messenger RNA biogenesis [BR:
bag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bcoa_2929
DNA repair and recombination proteins [BR:
bag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Bcoa_2929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HEM4
Cas3-like_C_2
SPOR
SpoIVA_ATPase
Motif
Other DBs
NCBI-ProteinID:
AEP02105
UniProt:
G2TL25
LinkDB
All DBs
Position
3143322..3144806
Genome browser
AA seq
494 aa
AA seq
DB search
MDLLSFLKSKFGFSAFRPGQEEVIRSLLDGKDTLAMLATGTGKSLCYQLPAYLLDGSCII
VSPLLSLMQDQTEQMKMRGEKSVVALNSFLTGPEREAALAHLGAFKFIFVSPEMLHNRHV
LGKLKTIRTALFAVDEAHCISQWGHDFRPEYLNLGEVRKQLGTPLTLALTATATEQVRDD
ICKYLGLKDPNRFIYSVNRPNIAIKIDRIPSYREKEEKLVAYAKNLQKPGIIYFSSKKAA
EEMAARLRQEGIAEAAAYHSGIDQEQRILIQQQFIYGQIKIICATSAFGMGVNKADIRFV
IHFHLPLQMEAYLQEIGRAGRDGLPSIAVLLYTEGDERLPLQLIEAELPTDAQLAAFSRW
KGDLKEAGAALGCTEPQLRFLLHHRVLNLPEEAWTREVAAIRDERMAYKRRKLKEMVQMV
RSSSCRRSEILRYFGEPPAAGNEACCDICGLETALYESNQKSGGTLETVPAWELLLQDLF
RKGEQKWHEENRRI
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
gtggatcttttaagctttttgaaaagtaagttcgggttcagcgcattccggccagggcag
gaagaagtcatccgttcactgctggacggtaaagatacactggcgatgcttgcgaccggt
accggaaaatctttatgctaccagttgcctgcctatttgctggacggatcctgcatcatt
gtttctccgcttttatcgctcatgcaggaccagacagagcagatgaaaatgcgcggcgaa
aaaagtgtggttgcgttaaattcgtttttaaccggtccggagcgggaagcggcccttgcg
catctgggcgctttcaaattcatctttgtctcgccggagatgctgcacaaccgccatgtc
ctcggaaaattaaaaaccatccggactgcgctctttgcagtcgatgaagcgcattgtatt
tcccagtggggtcatgatttcaggccggaatacttaaaccttggcgaagtccggaaacaa
ttgggcacaccgcttaccctagctctgaccgccacagcaacagaacaggtgagggacgat
atttgcaagtatcttggcttaaaagacccaaaccggtttatttattctgtcaacaggccc
aatatcgccattaaaatagaccggattccttcataccgcgaaaaagaggaaaaactagtt
gcctatgcgaaaaacttgcagaagcccggcatcatctatttttcaagcaaaaaggcggct
gaggaaatggcggcgcggttaaggcaggaggggatcgccgaagcggccgcctatcacagc
ggcattgaccaggagcaaagaattttgatccagcagcagtttatttacggacagatcaag
atcatttgtgcgacaagcgcgtttggcatgggggtgaacaaagcagatatccgctttgtc
atccattttcacctgccgttgcagatggaagcctatctgcaggaaatcggtagagccggg
cgggacgggctcccgagcattgccgtccttttgtatacggaaggggatgaacggctcccg
cttcagctgatcgaggctgagcttccgactgatgcacaattggccgctttcagcagatgg
aaaggagatttgaaggaagccggggcggcgcttggatgcacggaaccgcaactccggttt
ctgctgcaccatagagtgcttaacctgccggaagaagcatggacccgggaggttgcagcc
atccgggacgagcggatggcgtacaagcgccggaagttaaaggaaatggtgcagatggtc
cggtcttcgtcatgccgccgctcggaaattttacggtatttcggtgaaccgcccgctgct
ggcaatgaagcgtgctgtgacatttgcggccttgaaacagccttatatgaaagcaatcaa
aaaagcgggggcaccctcgaaaccgttcctgcatgggaattgcttttgcaggacctattc
agaaaaggggaacaaaaatggcacgaagaaaacaggcggatttga
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