Buttiauxella agrestis: BADSM9389_05110
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Entry
BADSM9389_05110 CDS
T06676
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bage
Buttiauxella agrestis
Pathway
bage03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bage00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BADSM9389_05110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bage03019
]
BADSM9389_05110
03009 Ribosome biogenesis [BR:
bage03009
]
BADSM9389_05110
Enzymes [BR:
bage01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BADSM9389_05110
Messenger RNA biogenesis [BR:
bage03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BADSM9389_05110
Ribosome biogenesis [BR:
bage03009
]
Prokaryotic type
rRNA helicases
BADSM9389_05110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
BCG07883
LinkDB
All DBs
Position
525432..527423
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AA seq
663 aa
AA seq
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MTDIIETTTIETTFSDLGLNDSILKALNDLGYEKPSPIQAECIPQLLAGRDVLGMAQTGS
GKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQR
YDVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLKGLVLDEADEMLRMGFIEDVETIM
AQIPEGHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVHGMRKNE
ALVRFLESEDFDAAIIFVRTKNATLEVAEALEQSGYNSAALNGDMNQALREQTLERLKDG
RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER
RLLRNIERTMKLTIPEVELPNRELLSERRLAKFAAKVQQQLESSDLDLYRGLLAKIQPSA
ESEEALDMETLAAALLKMAQGERPLILPPDAPMRPRREFRERDERFERSDRAPRGDRPDR
APRGDRPERSDRPQRDGDAPRRERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISS
RYIGNIKLFGTHSTIELPKGMPGEILQHFTRTRILNKPMNMQLMGDAQPRTDRGGERRGG
GAGAGAGRSFGGGERREGGRGPRRDGPAGAGAPRSFSGERREGGRGPRREDGAAPTRRRT
TEA
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgactgacatcatcgagactactactatcgaaactactttttctgatctgggtcttaac
gactccatccttaaagccctgaacgatctgggttacgaaaaaccatctccaatccaggca
gagtgtatcccacagctgctggctggccgcgatgtgctgggtatggcccagacgggtagc
ggcaaaactgcagcgttctctttaccgctgctgcacaaccttgatccagagctgaaagca
ccacaaatcctggtgctggcaccgacccgcgaactggcggttcaggttgctgaagccatg
acggatttctctaaacatatgcacggcgtaaacgttgtagccctttacggtggccagcgt
tatgacgtgcagttgcgcgccctgcgtcagggaccacaaattgttgtgggtaccccaggt
cgtctgcttgaccacttaaaacgcggtacgctgaatctgtccaacctgaaaggtctggta
ctggacgaagctgatgaaatgttgcgtatgggcttcatcgaagacgttgaaaccatcatg
gctcagattccagaaggtcatcagaccgctctgttctctgcaactatgccagaagcgatt
cgtcgtattacccgtcgcttcatgaaagatccgcaggaagttcgcattcagtctagcgtt
actactcgcccggacatcagccagagctactggactgtgcacggcatgcgtaagaacgaa
gcactggttcgtttccttgagtctgaagattttgatgcggcgatcattttcgtacgtacc
aaaaacgcaactctggaagtggcagaagcgctggaacaaagcggctataacagtgctgca
ctgaacggtgacatgaaccaggcgttgcgtgagcaaactctggagcgtctgaaagacggt
cgtctggacatcctgattgcaaccgacgttgcagctcgtggtctggacgttgagcgtatc
agcctggttgttaactacgacatcccgatggactctgaatcttacgttcaccgtatcggt
cgtaccggtcgtgcaggccgtgctggccgtgctctgctgttcgttgagaaccgcgagcgt
cgtctgctgcgtaacatcgaacgcaccatgaagctgactattcctgaagttgaactgcca
aaccgtgaactgctgagcgagcgtcgcctggctaagtttgccgctaaagttcagcagcaa
ctggaaagcagcgatctggatctgtaccgtggtctgctggcgaaaatccaaccttctgct
gaatcagaagaagcgttggatatggaaacactggctgcagcactgctgaaaatggctcaa
ggcgaacgtcctctgatcctgccaccagatgcgccaatgcgtccacgtcgtgaattccgt
gaacgtgatgagcgtttcgaacgttcagaccgtgcaccacgtggcgatcgtccagatcgt
gcaccacgcggtgaccgtccagagcgttcagatcgtccacagcgtgatggcgatgcacca
cgtcgcgaacgtcgtgatgttggcgatatggaactgtaccgtattgaagttggccgtgat
gatggtgttgaagttcgtcatatcgttggcgctatcgctaacgaaggtgatatcagcagc
cgttacatcggtaacatcaagctgttcggtactcactctactatcgaactgccaaaaggc
atgccgggcgaaatcctgcagcactttacccgtactcgtattctgaacaaaccaatgaat
atgcagttgatgggtgatgcacaacctcgtactgatcgtggcggcgaacgtcgtggcggc
ggtgctggtgcaggtgctggccgtagcttcggtggtggtgagcgtcgtgaaggcggtcgc
ggtccacgtcgtgatggccctgcaggtgctggtgctccacgtagcttcagcggcgaacgt
cgtgaaggcggtcgtggcccacgtcgtgaagatggtgcagctccaactcgtcgtcgtaca
actgaagcttaa
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