Buttiauxella agrestis: BADSM9389_20170
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Entry
BADSM9389_20170 CDS
T06676
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bage
Buttiauxella agrestis
Brite
KEGG Orthology (KO) [BR:
bage00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bage03032
]
BADSM9389_20170 (topA)
03400 DNA repair and recombination proteins [BR:
bage03400
]
BADSM9389_20170 (topA)
Enzymes [BR:
bage01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BADSM9389_20170 (topA)
DNA replication proteins [BR:
bage03032
]
Prokaryotic type
DNA Topoisomerases
BADSM9389_20170 (topA)
DNA repair and recombination proteins [BR:
bage03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BADSM9389_20170 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BCG09349
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Position
2158553..2161156
Genome browser
AA seq
867 aa
AA seq
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MNMGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSTTKKSADSASTKGTKK
VKKDERGALVNRMGVDPWHNWEAQYEVLPGKEKVVSELKSLAEKADHIYLATDLDREGEA
IAWHLREVIGGDETRYSRVVFNEITKNAIQQAFEKPGELNIDRVNAQQARRFMDRVVGYM
VSPLLWKKIARGLSAGRVQSVAVRLVVDREREIKAFVPEEYWEVDANLTTPKGDSLPVQV
SHHKDKPFRPVNREQTMSAVSELEKARYTVLEREDKPTSSKPGAPFITSTLQQAASTRLG
FGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDAVSMVRGYIEESFGKKYLPEAANQYSSK
ENSQEAHEAIRPSDVSVVAESLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLTVQAG
DFRLKTRGRTLRFDGWTKVMPALRKGDEDRTLPAVEQGDELALVEVIPGQHFTKPPARFS
EASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELM
NYDFTAQMESSLDQVANNQAEWKGVLDNFFSDFSEQLGKAELDPEEGGMRPNQMVLTSID
CPTCGREMGIRTASTGVFLGCSGYALPPKERCKTTINLVPENEVLNVLEGDDAETNALRA
KRRCVKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEM
HLKMGRFGKYMACTNDDCKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAG
VFLAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQQDADGNKAVVRFSRKTKQQ
YVSSEKEGKATGWSAFFVDGKWVEGKK
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
gtgaatatgggtaaagctctcgtcatcgttgagtccccggcaaaagccaaaacgatcaac
aaatatctcggtaatgactacgtggttaagtccagcgtcggtcatatccgtgatttgccg
accagtggatcaaccaccaagaagagcgctgactccgcctccaccaaagggaccaaaaag
gtcaaaaaggatgaacgcggcgcgctcgtaaatcgtatgggtgtcgatccatggcacaac
tgggaagcacagtacgaagtgctgcctggtaaggagaaagtggtttcagaactgaagtca
ctggctgaaaaagcagaccatatctatctcgcaaccgaccttgaccgcgaaggggaagcc
attgcatggcacctgcgggaagttatcggtggtgatgaaacgcgttacagccgcgttgtg
tttaacgagattacaaaaaatgcaattcaacaggccttcgaaaagccgggcgaattgaat
attgaccgtgttaacgcacagcaggcgcgtcgttttatggaccgcgttgtgggctacatg
gtttctccgctgctgtggaaaaaaattgcccgaggtctttctgctggccgcgtacagtcc
gttgctgtgcgtctggttgttgaccgtgaacgtgaaattaaagcgttcgtaccggaagaa
tactgggaagttgacgcgaacctgacaacgccgaaaggcgatagtttgccggttcaggtc
agccaccataaagacaagccgttccgcccggttaaccgcgagcagacaatgtctgcggtt
agcgagttggaaaaagcgcgttacaccgtgcttgagcgtgaagataaaccgaccagtagc
aaacctggtgcgccgtttatcacctccacgttgcaacaggctgcaagcacccgtcttggt
tttggtgtgaagaaaaccatgatgatggcgcagcgtctgtatgaagcgggtcatatcact
tacatgcgtactgactcaaccaacttgagccaggatgcagtgagtatggttcgtgggtat
atcgaagagagtttcggtaagaaatatctcccggaagccgcgaatcagtactccagcaaa
gaaaactctcaggaagcgcacgaagcgattcgtccttctgatgtgagtgtcgttgctgag
tcgcttaaagatatggaagctgacgcgcagaaactttaccagttgatctggcgccagttt
gtggcgtgtcagatgacaccagcgcaatacgattccaccactttgacggtgcaagcaggt
gacttccgccttaaaacgcgtggccgtacgctgcgttttgatggctggactaaagtcatg
cctgcactgcgcaaaggcgatgaagaccgtactttacccgccgttgaacagggtgatgag
ctcgcgctggttgaagttattcctgggcagcactttactaaaccaccggctcgttttagc
gaagcttcgttggttaaagagttggaaaagcgtggcattggccgtccgtctacttacgcg
tcaatcatttccaccatccaggatcgtggctatgtgcgtgtagagaaccgccgcttctac
gctgaaaagatgggtgaaattgttactgaccgcctggaagaaaacttccgcgagctgatg
aactacgatttcaccgcgcagatggaaagcagccttgaccaggtggccaataatcaggcc
gagtggaaaggggtgctggataacttctttagcgatttcagcgaacagcttggtaaagct
gaactggatccggaagaaggcggtatgcgtccaaaccagatggttctgaccagtattgat
tgcccgacctgtggtcgtgaaatgggtatccgtactgccagcactggtgtgttcctgggt
tgttctggttatgcactgccgccgaaagagcgctgcaaaaccaccatcaacctggtgccg
gaaaacgaagttctcaacgtgctggaaggcgatgacgcggaaactaacgccctgcgtgcg
aagcgtcgttgcgtgaagtgtggcactgcgatggacagctacctcatcgatccaaaacgt
aaacttcacgtctgtggtaataacccgacgtgtgatggttacgaaatcgaagagggcgaa
ttccgcatcaagggttatgacggccccatcgttgagtgtgagaaatgtggttctgaaatg
cacctgaaaatggggcgtttcggtaagtacatggcttgtaccaatgacgattgcaaaaat
acgcgtaagatcctgcgtaatggcgaagtggcaccaccgaaggaagatccggttccattg
cctgagttgccttgcgagaagtcagacgcttactttgttctgcgtgatggcgcggcgggt
gttttccttgcggcaaacactttccctaaatcgcgtgaaacacgtgcgcctttggtcgaa
gaactttatcgcttccgcgaccgcctgccagaaaagctgcgttatctggccgacgcacca
cagcaagatgcagacggcaacaaagcggtcgttcgctttagccgtaagactaagcaacag
tatgtttcttctgaaaaagaaggcaaagcgactggctggtcagcattctttgttgatggt
aagtgggttgaaggtaagaagtaa
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