Buttiauxella agrestis: BADSM9389_21670
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Entry
BADSM9389_21670 CDS
T06676
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bage
Buttiauxella agrestis
Brite
KEGG Orthology (KO) [BR:
bage00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bage03019
]
BADSM9389_21670
Enzymes [BR:
bage01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BADSM9389_21670
Messenger RNA biogenesis [BR:
bage03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BADSM9389_21670
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
nSTAND3
nSTAND_NTPase5
NACHT
PhoH
T2SSE
ResIII
DUF6145
AAA_23
Phage_int_SAM_2
Motif
Other DBs
NCBI-ProteinID:
BCG09499
LinkDB
All DBs
Position
complement(2318431..2322330)
Genome browser
AA seq
1299 aa
AA seq
DB search
MENIKPSLSSLFSRLDGLMLRDRQRFSRRIHGAKKVKNPESQQAVLDALAQEIEAAAGKV
LLRAASRPKITYPENLPVSQKKQDIYDAIRDNQVVIVAGETGSGKTTQLPKICMELGRGL
TGLIGHTQPRRLAARTVANRIAEELQTEPGGCVGYKVRFTDHVSENTMVKLMTDGILLAE
IQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSRHF
NNAPIIEVSGRTYPVEVRYRPIVEDADDTDRDQLQAIFDAVDELGQESAGDILIFMSGER
EIRDTADALNKLNLPHTEVLPLYARLSNSEQNRVFQSHVGRRIVLATNVAETSLTVPGIK
YVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSDGICIRLYSEDDFLSRP
EFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITSEADL
SVYKLTSSGRQLAQLPVDPRLARMVLEAQKFGCVREVMIITAGLSIQDPRERPMDKQQAS
DEKHRRFHDKESDFLAYVNLWNYLGEQQKELSSNQFRRQCKLDYLNYLRVREWQDIYTQL
RQVVKELGLPINSEPADFRSVHCALLTGLLSHIGQKDADKQEYTGARNARFSIFPGSGLF
KKPPKWTMVAELVETSRLWGRIAARIDPEWVEPLAQHLLKRSYSEPHWEKSQGAVMATEK
VTLYGLPIVAARSVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRDNLKLRNEIEELEH
KSRRRDILVDDDTLFEFYDQRIAHDVISARHFDNWWKKTSKETPDLLNFEKSMLIKEGAE
QVSKLDYPNFWHQGNLKLRLTYQFEPGADADGVTVHIPLPLLNQVEETGFEWQIPGVRRE
LVIALIKSLPKPVRRNFVPAPNYAEAFLGRATPLELPLLESLEREFRRMSGITIDREDWH
WDQVPDHLKMTFRIVDEHNKKLKEGKDLTELKGGLKDKVQQTLSAVADDGIEQSGLHIWS
FGSLPESYEQKRGNYRMKAFPALVDEKESVAIKLFDNPLEQQQAMWRGLRRLLLLNIPSP
IKYLHEKLPNKAKLGLYFNPYGKVMDLIDDCISCGVDKLIAQAGGPVWSEEGFAALHEKV
RAELNETVVEIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDVKAQMSGLVYRGFVTGN
GYKRLGDTLRYLNAIEKRLEKMAVDTHRDRVQMLKVEHVQQTWQQWLNKLPPARRVDDDV
QEIRWMIEELRVSFFAQQLGTPYPISDKRILQAMEQITA
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacataaaaccctcactgtcctcattattctctcgcctcgacggcttaatgcta
cgcgacagacaacgcttctcccgccgtatccatggcgcgaagaaggtgaaaaatcctgaa
tcgcaacaggcggtgttagatgcactggcccaggaaatcgaagcggcagccggtaaggtt
ctgctgcgcgcagcctcgcgcccaaaaatcacttaccctgaaaacctgcctgttagccag
aagaaacaggatatttacgacgccattcgtgataaccaggtcgttatcgtggcgggtgaa
accggctcaggtaaaaccacgcagttgccaaaaatttgcatggaacttgggcgcgggtta
acagggctgattggccacacgcagccgcgccgtctggcggcgcgaaccgtcgccaaccgt
attgccgaagagttgcaaactgaaccgggcggctgtgttggctataaggtgcgtttcacc
gatcacgtcagtgaaaacaccatggtcaaactgatgaccgacggcatcctgctggctgaa
attcagcaagaccgactgctgatgcagtacgacaccatcatcattgatgaagcgcacgaa
cgcagtctgaacatcgatttcctgctgggctatttgcgtgaattattgccgcgtcgcccg
gatctgaaaatcattattacctcggcgaccatcgaccctgaacgcttctcgcgccatttc
aacaatgcgccgattatcgaagtttctggccgtacttacccggtagaagtgcgttatcgc
ccgattgttgaagatgccgacgataccgaccgcgaccagctacaggcgatttttgatgcg
gttgatgagctaggccaagaaagcgccggagacattctgattttcatgagcggtgagcgc
gaaattcgcgacaccgctgatgcgctcaacaagctgaatctgccgcacaccgaagtgctg
ccgctgtatgcacgcttatcgaatagcgaacaaaaccgggtgttccagtcgcacgtcggg
cgtcgcatcgtgctggcgacaaacgtggctgaaacctcgctcaccgtgcctggcattaaa
tacgtcattgaccccggtacggcgcgtatcagccgttatagctaccgtaccaaagtgcag
cgcttgccgattgagccggtttcgcaggcgtcggcaaaccagcgtaaaggccgctgcggg
cgtgtctccgacgggatctgtattcgtctgtattccgaagatgatttcctgtcgcgcccg
gaatttaccgacccggaaattctgcgcaccaacctggcttccgttatcttgcagatgact
tcgctgggccttggcgatattgccgcattcccgttcgttgaagcgccggacaaacgcaat
attcaggacggtgtgcgcctgcttgaagaacttggcgcgattaccagcgaggccgatctc
agcgtctacaagttaacctcttctggccgtcagcttgcacaattgccggtcgacccgcgt
cttgcccgtatggtgctggaagcgcagaaatttggctgtgtgcgtgaagtgatgatcatc
accgccggtttgtcgattcaggacccgcgcgagcgcccgatggacaaacagcaggcgtct
gacgaaaaacatcgtcgtttccacgataaagaatctgatttcctggcctatgtgaacctg
tggaattacctcggcgagcagcaaaaagagctgtcgtcgaaccagttccgccgccagtgc
aagctcgattatctcaactacctgcgtgtgcgcgaatggcaggacatctacacccaattg
cgccaggtggtgaaagaacttggtttgccgattaacagcgaaccagcggatttccgctcc
gtccattgcgcattactgaccggtttgctttcccatatcggccagaaagatgccgataaa
caggaatacaccggggcgcgtaacgcccgtttctccattttcccaggctccggtttattc
aaaaaaccgcctaaatggacgatggtcgccgaactggtggaaactagccgcctgtgggga
cgcattgccgcccgcatcgacccggaatgggtagagccgctggcgcagcacttactcaaa
cgttcatacagcgaaccgcactgggagaaatcgcagggcgcggtcatggcgacagaaaaa
gtcacgttgtacggtttgccgatagttgccgcccgcagcgtgaactacagccagattgac
ccggcactttgccgtgagctgtttattcgccatgcgttagttgaaggcgactggcagacc
cgccatgcgttcttccgcgacaacctcaagttgcgcaatgaaattgaagaacttgagcac
aagtcccgccgccgcgacatcctggtggacgacgacacgctgtttgagttttacgaccag
cgcattgcgcacgatgtcatttctgctcgccactttgataactggtggaaaaagaccagc
aaagagacgccggacctgctcaatttcgaaaagagcatgttgatcaaagagggcgcggaa
caggtcagcaagctcgactatccgaacttctggcatcagggcaatctcaaactacgcctg
acttaccagtttgaaccgggcgcggatgccgatggtgtcaccgtgcatattccgctgccg
ctgctaaaccaggttgaagagaccggttttgaatggcagatccctggtgtgcgccgcgaa
ctggtcattgcgctgatcaagtcattgcctaagccagtacgccgcaattttgtgcctgcg
ccaaactacgccgaagcgtttttaggtcgtgccacgccgctggaattgccgctgctggaa
agtttagagcgcgaattccgccgtatgtcaggcatcaccattgaccgtgaagactggcat
tgggatcaggtgcccgatcacctgaaaatgacgttccgcatcgttgatgagcacaataaa
aagctcaaagagggtaaagacctcaccgagttgaaaggcgggctgaaagacaaagttcag
caaaccctctcggcggtggcagacgacggtatcgaacaaagcggactgcacatctggagc
tttggctcgctgccggaaagctacgagcaaaaacgcggcaattaccgcatgaaggcattc
ccggcgctggtggatgaaaaagagagcgtggctatcaagctgtttgataatccgctcgaa
cagcaacaggctatgtggaggggtttgcgccgtttactgctgctgaatattccatcgccg
attaaatacctgcatgaaaagctgccgaacaaagccaaactcggcctgtactttaacccg
tacggcaaagtgatggatttgattgatgactgcatttcttgcggcgtcgataagctgatt
gcgcaggccggtggcccggtctggagcgaagagggttttgctgcgctgcatgagaaagtt
cgcgcagaacttaacgaaaccgtggtggaaattgcgaagcaggtcgaacaaatcctcacg
gcggtgttcaacatcaacaaacgcctgaaagggcgcgtggacatgaccatggcgctcggt
ttgtcagatgtgaaagcgcaaatgagcggccttgtgtatcgcggttttgtcaccggaaat
ggctacaaacgtttaggcgatacgctgcgttatctgaatgccatcgagaaacgcctcgag
aaaatggcggtcgatacgcatcgcgaccgggtacaaatgctgaaagtggaacatgtgcag
caaacctggcagcagtggctgaataaactgccgccagcccgccgcgttgacgacgacgta
caggaaatccgctggatgattgaagagttgcgcgtcagcttctttgctcaacaactcggc
acaccgtacccgatttccgataagcgcattttgcaggcgatggaacagattacggcgtaa
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