Buttiauxella agrestis: BADSM9389_25370
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Entry
BADSM9389_25370 CDS
T06676
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bage
Buttiauxella agrestis
Pathway
bage03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bage00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BADSM9389_25370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bage03400
]
BADSM9389_25370
Enzymes [BR:
bage01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BADSM9389_25370
DNA repair and recombination proteins [BR:
bage03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BADSM9389_25370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BCG09866
LinkDB
All DBs
Position
2728570..2732016
Genome browser
AA seq
1148 aa
AA seq
DB search
MPENYRYSLPVKAGDQRQLGELTGSACATEVAEIIERHNGPVVLIAPDMQNALRLHDEIS
QFTESMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLILPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDNLRSQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSDQPY
RIDFFDDEIDSLRVFDVDTQRTLEEVDAINLLPAHEFPTDKTAIELFRSQWRDKFDVKRE
PEHIYQQVSKGMLPAGIEYWQPLFFSEPLPPLFSYFPKNTLLINTGDIETNAERFWQDTF
ARFENRGVDPMRPLLPPESLWLRVDELFSELKNWPRIQLKTESLADKAAFTNLGYHALPD
LSVQAQQKAPLDNLRKFLESFDGPVVFSVESEGRREALGELLARIKVAPKRIYRLDEAAD
KGRYLMLGSSEHGFIDTLRNRALICESDLLGERVSRRRQDSRRTINPDTLIRNLAELHTG
QPVVHLEHGVGRYAGLTTLEAGGITAEYLMLTYAGDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDREQYQMFCDAFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHLDNFRDRFANWPVRIEMLSRFRTAKEQAQILEEAREGKVDILIGTHKLLQNDVKM
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIQKAADKLAELVPEARITI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EGQSGSMETIGFSLYMEMLENAVDALKEGREPSLEDLTSSQTEVELRMPALLPDDFIPDV
NTRLSFYKRIASAKTAHELDELKVELIDRFGLLPDPARNLLDIAALRQQAQKLGVRKIEG
NEKGGVIEFAEKNNVNPVWLIGLLQKQPQHYRLDGPTRLKFIEDLADRKARMEWVRNFMH
QLAQNAAA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaattatcgctactccttacctgtaaaagctggcgatcagcgccagcttggt
gaactcaccggctctgcgtgcgcgactgaagttgccgaaatcatagagcgccataatggc
ccggtggtgttgatcgcccctgatatgcagaatgcgctgcgtctgcatgacgaaatcagc
cagtttacggaaagcatggtgatgaatcttgccgactgggaaaccctgccttacgacagt
ttctcgccgcatcaggaaatcatctcttcacgtttatcaacactgtatcagttgccaacc
atgcagcgcggcgtgttaatcctgccggtgaatactctgatgcaacgcgtgtgtccgcac
agctatttacacggacacgcgttagtgatgaagaaaggccagcgtttgtcgcgtgataac
ctgcgcagccaactggaacaagccggttatcgcagcgttgatcaggtcatggagcacggt
gaatttgcgacccgtggcgcattattggatttgtatccgatgggcagcgaccagccctat
cgcatcgactttttcgatgatgaaatcgacagcctgcgcgtatttgacgttgatacgcag
cgcacgctcgaagaagtcgacgccattaacctgcttcctgcgcacgaattcccgaccgat
aaaacagccatcgaactgttccgcagccagtggcgcgacaagtttgatgtgaagcgcgag
cctgagcatatttaccagcaggtcagtaaaggtatgctcccggcggggattgaatactgg
cagccgctgttcttcagcgaaccattaccgccactttttagctatttcccaaaaaatacg
ctgctgattaacaccggtgatatcgaaaccaacgccgagcgtttctggcaggatacgttt
gcccgtttcgagaatcgtggcgttgacccaatgcgcccgctgctcccgccagaaagcctg
tggttacgcgttgacgaactgttcagcgaactaaaaaactggccgcgcattcagctcaaa
acggaatcgttagccgacaaagctgcatttaccaacctgggttatcacgccctgcccgat
ctatccgttcaggcgcaacaaaaagcgccgctcgataacctgcgaaaattccttgaatct
ttcgatggccccgtggtgttttccgtcgaaagtgaaggccgccgtgaagcattaggcgaa
ctgttagcgcgaattaaagttgccccgaaacgtatttatcggctcgatgaagcggccgat
aaaggccgttatttaatgctgggttccagcgaacatggttttatcgacacgctgcgcaac
cgggcgttaatttgtgaaagcgatctgctgggcgagcgcgtcagccgccgccgtcaggat
agccgtcgcaccattaacccggatacgttgattcgcaacctggccgagttgcataccggg
cagcctgttgtgcacctcgagcatggcgtcgggcgttatgccggcctcaccactcttgaa
gcgggcggcattaccgctgaatacctgatgctgacgtacgcaggggacgccaaactttat
gtcccggtttcgtcgctccatttaattagccgttatgcgggcggtgccgaagaaaatgca
ccattgcataagcttggcagcgatgcctggtcccgcgcgcgtcaaaaagcggctgagaaa
gtacgcgatgtggcggcagaactgctggatatttacgcccaacgtgcagccaaacaaggc
ttcgccttcaagcatgaccgtgaacagtaccaaatgttctgcgatgctttcccgtttgag
accacgccggaccaggctcaagccatcaacgcggtattaagcgacatgtgccagccattg
gccatggatcgcctggtgtgtggcgacgtcggctttggtaaaaccgaagttgcgatgcgt
gccgcattcctggcggtggaaaacaacaaacaagttgcggtactcgtgccaacgacactg
ctggcccaacagcatctcgacaacttccgcgaccgttttgctaactggccggtgcgtatc
gaaatgctgtcgcgttttcgtaccgctaaagagcaagcacaaatcctggaagaggcgcgt
gaagggaaagtcgacattcttatcggcacccacaagctgctgcaaaatgatgtgaagatg
aaagatctcggcctgctgattgtcgatgaagaacaccgctttggggtgcgccacaaagag
cgtatcaaggcgatgcgcgccgatgtagatatcctgacgctgaccgccaccccgattccg
cgcaccttgaatatggcgatgagcggaatgcgcgatttgtcgattatcgccactccgccg
gcccgccgcctggcagtgaaaaccttcgtgcgtgaatacgacagccttgtggttcgcgaa
gccatactgcgtgaagtgttgcgtggcggccaggtttactatctttacaacgatgtcgaa
aacatccagaaagcggcagacaaactcgcggaattggttccggaagcacgtatcaccatc
ggccacggccaaatgcgcgagcgtgagctggaacgggtgatgaatgatttccaccaccag
cgttttaacgtactggtgtgcaccacgattatcgaaaccggtattgatattccgacagcc
aacaccatcatcattgaacgcgcagaccatttcggcctcgcgcagttgcaccagctccgt
ggccgcgttgggcgttcccaccaccaggcttatgcgtggctgctaacgcctcacccgaaa
gccatgaccaccgatgcgcaaaagcgcctcgaagctatcgcttctctcgaagatttaggg
gcgggttttgcgctggcaacgcacgatctggaaatccgaggtgctggcgaattgctcggt
gaaggccagagcggctcaatggaaacgatcggtttttctctgtatatggaaatgctggaa
aacgcggtcgatgcgctcaaagaaggtcgcgagccatcgcttgaagacttgaccagcagc
cagaccgaagtcgaattgcgcatgcctgccctactgccagatgattttatcccggatgtg
aacacgcgcctgtcattctacaagcggattgccagcgccaaaacggcgcatgagcttgac
gagctgaaagtcgaactgattgaccgctttggattgctaccggatccggcgcgtaatctg
ttggatatcgcggcattgcgtcagcaagctcagaaactgggtgtgcgtaaaatcgaaggc
aatgaaaaaggcggagtgattgagtttgccgagaagaataatgttaatccggtttggctg
attggcttattgcaaaagcaaccgcagcattaccgcctggatgggcctacgcgtctaaaa
tttattgaagatctggctgaccgcaaagcgcgaatggaatgggtgcgtaactttatgcat
cagttagcccagaacgcagcggcttaa
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