Buttiauxella agrestis: BADSM9389_28550
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Entry
BADSM9389_28550 CDS
T06676
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bage
Buttiauxella agrestis
Pathway
bage03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bage00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BADSM9389_28550 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bage03019
]
BADSM9389_28550 (rhlE)
Enzymes [BR:
bage01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BADSM9389_28550 (rhlE)
Messenger RNA biogenesis [BR:
bage03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BADSM9389_28550 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BCG10180
LinkDB
All DBs
Position
complement(3078260..3079624)
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AA seq
454 aa
AA seq
DB search
MSFDSLGLNADILRAVEEQGYREPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL
QRLVDKQPHAKGRRPVRALILTPTRELAAQIGENVSDYSKYLDIRSLVVFGGVSINPQMM
KLRSGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAR
RQNLLFSATFSDDIKGLAEKLLHNPEEVSVARRNTASEQVTQHVHFVDKKRKRELLSQMI
GEGNWQQVLVFTRTKHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKNGGIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
ERVLKREVPRMAIPGYEVDPTIPAEPIVNGRQQQRGGGRGNGGGQGQGQRRGGNGGASSE
RSNAPRRPSRPQADGAKPAGANGRRRPPRKPASA
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattctctcggcctgaacgccgatattctgcgtgcagtggaagagcagggc
tatcgtgagcctacccctattcaacgtcaggcgatcccggttgttttagccggtcgtgac
ctgatggccagtgcccaaaccggcaccggcaaaaccgctggttttaccttgccgctgttg
cagcgcctggtagacaaacagccgcatgcgaaaggccgtcgcccagtgcgcgccctgatc
ctgacgccaacccgtgagcttgctgctcagattggtgaaaacgtcagcgactacagcaaa
tatttagatatccgttcgctggtggttttcggcggcgtgagcattaacccacagatgatg
aaactgcgtagcggtgtcgatgtgctggtggcaacaccgggccgtctgctggatttagaa
caccagaacgcagttaaactcgaccaggtagaaatcctggtactggatgaagctgaccgc
atgctggacatgggctttatccacgatatccgtcgcgtgctggcaaaactgcctgctcgt
cgccagaacctgctgttctccgcgaccttctctgacgatattaaaggcctggctgaaaag
ctgttgcacaacccggaagaagtttccgtggcgcgtcgcaacaccgcttctgagcaagtg
actcagcacgttcatttcgttgataaaaaacgtaaaagagaactgctttcacagatgatt
ggcgaaggtaactggcagcaagtgctggtgtttacccgtaccaaacatggtgcaaaccac
ctggcagaacagctgggcaaagacggtatcactgctgcggccatccacggtaacaagagc
cagggcgcgcgtactcgtgcattggctgactttaaaaacggtggcatccgtgtgctggta
gcaacggacatcgccgcgcgtggccttgatatcgaagaactgccacacgttgtgaactac
gaactgccaaacgtaccggaagactacgtgcaccgtatcggccgtactggccgtgctgcg
gcaacgggtgaggcgctgtctctggtgtgtgttgatgaacacaaactgctgcgtgacatt
gaacgcgtgcttaaacgtgaagtgccgcgtatggcgattccagggtacgaagtggaccca
actatcccagccgagcctatcgttaacggtcgccagcagcagcgtggcggcggtcgtggc
aacggcggtggtcagggccagggtcaacgtcgtggtggcaatggtggcgcatcatctgag
cgcagcaatgcaccgcgtcgcccatctcgcccacaggcagatggcgcaaaaccagcgggc
gctaatggtcgtcgtcgtccgccacgcaagccagcatcagcataa
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