Buttiauxella agrestis: BADSM9389_37200
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Entry
BADSM9389_37200 CDS
T06676
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bage
Buttiauxella agrestis
Pathway
bage03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bage00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BADSM9389_37200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bage03019
]
BADSM9389_37200
03016 Transfer RNA biogenesis [BR:
bage03016
]
BADSM9389_37200
Enzymes [BR:
bage01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BADSM9389_37200
Messenger RNA biogenesis [BR:
bage03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BADSM9389_37200
Transfer RNA biogenesis [BR:
bage03016
]
Prokaryotic type
tRNA degradation factors
BADSM9389_37200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
RNase_II_C_S1
Rho_RNA_bind
MetOD2
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
BCG11025
LinkDB
All DBs
Position
complement(4018630..4021098)
Genome browser
AA seq
822 aa
AA seq
DB search
MSKDPFQEREAEKYENPIPSREFILAHLSKREKPANRDELAEELNITGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGKVIGHRDGFGFLRVEGRKDDLYLSSEQMKMCMH
GDIVLAQPLGADRKGRREARIVRVLEPRTGQIVGRYFTDAGISFVVPDDSRLSFDILIPP
EGVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDHMGTGMAVDMALRTHEIPYVWPPE
VEAQVASLKEQVPEEAKIGRVDLRDLPLVTIDGEDARDFDDAVFCEKKRGGGWRLYVAIA
DVSYYVRPPTALDKEARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
STGRLTGSKFYEAVMSSHARLTYTKVWHMLQGDQELREQYAPLVKHIEELHNLYKVLDVS
RAQRGGISFESEEAKFIFNAERRIERVEQTVRNDAHKLIEECMILANIAAARFVEKNNEP
SLFRDHDRPSNDAITAFRSVLAELGLELPGGQKPEPRDYAELLNSIADRPDHEMLQTMLL
RSMKQAVYDPENRGHFGLALQSYAHFTSPIRRYPDLLLHRAIKYLLAKEQGHKGNSTESG
GWHYDMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMQDQVGNTFTGIIASVTGFGFF
VRLTDLFIDGLVHVSTLDNDYYRFDQIGQRLIGESGGQTYRLGDRVEVRVEAVHMDERKI
DFALISSTRVPRGAGKTEKDRAKKGANGNGPKRRQGGKRTNFEPDSTFRKEKGPAKPKKA
KAEKSVDKKAEPKAKKPKTQSDKTRKIAAATKAKRAAKKQPS
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatccttttcaggaacgagaagccgaaaaatacgaaaacccgatcccaagc
cgggaatttatactcgctcatctctccaaacgtgaaaaaccagccaatcgtgacgaactg
gctgaagaactgaatattactggtgaagaacaacttgaagcgctgcgtcgccgtttgcga
gccatggaacgcgatggacagttggtctttacccgccgccagtgttatgccctgccagaa
cgtctcgatttgctaaaaggcaaagtcattggccaccgcgatggcttcggtttcctgcgt
gtagaaggccgtaaagacgatctctacctttcatctgaacagatgaaaatgtgtatgcat
ggcgatatcgtgctggcacagccactgggtgccgaccgtaaaggccgtcgcgaagcgcgt
attgtacgcgtgctggagccaagaaccgggcaaattgttggccgctactttaccgatgct
ggtatcagtttcgtggtgccagacgacagccgtctgagcttcgatattcttatcccacca
gaaggtgtgatgggcgcgcgtatgggctttgtggtggtggttgagctcacccaacgcccc
actcgccgcaccaaagcggtgggtaaaatcgttgaagtgctgggcgaccacatgggtaca
ggcatggccgtcgatatggcgctgcgcacccatgaaatcccttatgtctggccgccagaa
gtggaagctcaggttgcttccctgaaagaacaagtgccggaagaagccaaaattggccgc
gtggatttgcgtgatctgccgcttgtcaccatcgatggtgaagatgcgcgtgactttgat
gacgccgtgttctgtgagaagaaacgtggcggcggctggcgtttatatgtcgctatcgcc
gacgtaagctattacgttcgcccgccgaccgcactggataaagaagctcgcaaccgtggc
acgtcagtttacttcccatcgcaggttatcccgatgctgccggaagtgctgtccaacggt
ttgtgctcgctgaacccgcaggttgaccgtctgtgtatggtctgtgaaatgaccatctct
tcgactggacgcctgaccggctctaaattctacgaagcggtaatgagttcccatgcgcgt
ctgacctacaccaaagtgtggcatatgttgcagggtgaccaggaactgcgcgagcaatat
gcgccgctggttaagcacatcgaagagctgcataacctctacaaagtgctggatgtttct
cgtgcgcagcgcgggggtatctcgtttgaaagcgaagaagcgaagtttatcttcaacgcc
gagcgccgtattgaacgcgttgagcaaaccgttcgtaacgacgcgcataaacttatcgaa
gagtgcatgatcctcgcgaatatcgcggcggcacgcttcgttgagaagaacaacgagcca
tctttgttccgcgatcacgatcgtccaagcaacgacgccattaccgcgttccgttctgtg
ctggccgagctgggtctggaattgccaggcgggcagaagcctgagccgcgtgattacgca
gaattactgaactcgattgccgatcgtccggatcatgaaatgctgcaaacgatgctgctg
cgttccatgaaacaggcagtgtacgatccagaaaaccgtggtcactttggcctggcgttg
caatcctatgcgcactttacctcgccgattcgtcgttacccggatttgctgttacaccgt
gcaatcaagtatctgctggcaaaagagcagggtcacaaaggcaacagcaccgagtctggc
ggctggcactacgacatggaagagatgctgcaactgggccagcattgttctatggctgaa
cgccgcgcagatgaagcaacacgcgatgttgccgactggctgaaatgcgactttatgcag
gatcaggtcggtaatacctttactggcattatcgccagcgttaccggtttcggcttcttt
gttcgcctcaccgatctgtttatcgacggcctggtgcacgtttccactcttgataacgat
tactaccgtttcgaccaaatcgggcagcgcctgattggtgagtccggtggccagacttat
cgtttgggtgaccgtgtcgaagtgcgcgttgaagccgtccatatggacgagcgcaaaatt
gattttgctctgatctccagcactcgtgttcctcgcggcgcgggtaaaactgagaaagac
cgagcgaaaaaaggcgcaaacggcaacgggccaaaacgtcgtcagggcggtaaacgcacc
aacttcgagccagacagcactttccgtaaagagaaagggccagccaagccgaagaaagcg
aaagccgagaaaagtgtcgacaaaaaagccgagccgaaggcgaagaaaccaaaaacgcag
tcggacaaaactcgtaaaatagccgccgctacaaaagccaaacgcgcagcgaaaaagcag
ccgagctaa
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