Buttiauxella agrestis: BADSM9389_39310
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Entry
BADSM9389_39310 CDS
T06676
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bage
Buttiauxella agrestis
Pathway
bage03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bage00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BADSM9389_39310 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bage03021
]
BADSM9389_39310 (rpoC)
03400 DNA repair and recombination proteins [BR:
bage03400
]
BADSM9389_39310 (rpoC)
Enzymes [BR:
bage01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BADSM9389_39310 (rpoC)
Transcription machinery [BR:
bage03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BADSM9389_39310 (rpoC)
DNA repair and recombination proteins [BR:
bage03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BADSM9389_39310 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BCG11228
LinkDB
All DBs
Position
complement(4256920..4261146)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDENEQFVAKTSIIDTTVGRAILWMIVPKGLPYSIINQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGVSVGIDDMVIPAKKTEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTESVINRDGVEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILITRNTLLHEQMCDLLEANSVDSVKVRSVVGCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAESSIQVKNKGSIKL
SNAKSVVNSAGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGEQIAAGETVANW
DPHTMPVVSEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGTQIHSGDALARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVYAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIVNAGSSDFLEGEQAEYSRVKIANRELEANGKINVSFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPV
VPQVTAADATASLAELLNAGNLGGNDND
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgattcgttcatggtcgttcggcgaagttaaaaag
ccggaaaccattaactatcgtacgttcaaaccagaacgtgacggtctgttctgtgctcgt
atttttgggccagtaaaagactatgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtaatttgtgagaagtgcggcgttgaagtcacccaaactaaagtgcgccgtgag
cgcatgggtcacatcgagctggcttccccaactgcacacatttggttcctgaagtcactg
ccgtctcgtatcggcttgctgctggatatgccactgcgtgatatcgaacgtgtactttac
ttcgaatcttatgtggtaatcgaaggcggtatgaccaacctcgagcgtcgtcagatcctg
actgaagagcagtatctggatgcgctggaagagttcggtgacgaattcgatgcgaagatg
ggtgcggaagctattcaggccctgttgaaaaacatggatctggagcaagagtgtgaaact
ctgcgcgaagagctgaacgaaaccaactccgaaaccaaacgtaaaaagctgaccaagcgt
atcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaca
gttctgccggttctgccgccagatctgcgtccattagttccgctggatggcggtcgtttc
gcaacgtcagatctgaacgatctgtatcgtcgcgttatcaaccgtaacaaccgtttgaaa
cgcctgctggacctggctgctcctgacatcatcgtacgtaacgaaaaacgtatgttgcaa
gaagcggtagatgccctgctggataacggccgtcgcggtcgtgcaatcacgggttctaac
aagcgtcctctgaaatctttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacttgttgggtaaacgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgcctaagaaaatggcactggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggtcttgctaccaccattaaagctgcgaagaaaatg
gttgagcgcgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaactctgcaccgtttgggtatccaggcatttgagccagta
ctgatcgaaggtaaagctatccagcttcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggcagtacacgttccactgacgcttgaagctcagttggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtcaccagcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggccctaaagaagctgagcgtatttatcgcgcaggt
ctggcctctctgcatgcgcgtgtaaaagtgcgtatcaccgagtacgaaaaagacgaaaac
gaacaattcgttgcgaaaaccagcattatcgacaccaccgttggtcgtgcgattctgtgg
atgatcgtaccgaaaggcctgccttactccatcatcaaccaggcgttgggtaagaaagcc
atttccaaaatgctgaacacttgttaccgcattctgggtctgaaaccgacagtaatcttt
gctgaccaaactatgtacaccggctttgcttatgcagcgcgttcaggtgtttctgttggt
atcgatgacatggtcatcccagctaagaaaactgaaatcatctctgaagcggaagctgaa
gttgctgagattcaggaacagttccagtccggtctggtaacagcgggcgagcgttataac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatccaaagcgatgatggacaac
ctgcaaactgaatccgttattaaccgtgacggcgtcgaagagcagcaagtttccttcaac
agcatttacatgatggccgactccggtgctcgtggttctgcggcacagattcgtcagttg
gctggtatgcgtggtctgatggctaagccagatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgctcgt
aaaggtctggcggataccgcactgaaaactgctaactccggttatctgacgcgtcgtctg
gttgacgttgcacaggatctggttgttaccgaagacgattgtggcaccctcgaaggtatc
acgatgactccggttatcgaaggcggcgacgttaaagagccactgcgtgaccgcgtattg
ggtcgtgtaacggctgaagacgtactgaaacctggtactgctgatatcctgatcacacgt
aacactctgctacatgagcaaatgtgtgacctgttagaagctaactctgttgatagcgtg
aaagtacgttctgttgtgggttgtgaaaccgacttcggcgtatgtgcgcactgctatggt
cgtgacctggctcgtggccacatcatcaacaaaggtgaagcaatcggggttatcgcggca
cagtccatcggtgaacctggtactcagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgttctgctgctgaatccagcattcaggttaagaacaaaggtagcatcaagctc
agcaacgcgaagtcggttgtgaactctgccggtaaactggtagtgacttctcgtaacact
gaactgaaactgattgatgaattcggtcgtactaaagagagctataaagttccttacggt
gcggtaatgggcaaaggtgatggcgagcagattgcagcgggcgagaccgtagcaaactgg
gatccgcacaccatgccagtcgtttctgaagtaagtggtttcatccgctttactgacatg
atcgacggccagaccattactcgtcaaactgacgaactgacaggtctgtcatctctggtt
gttctggattctgcagaacgtaccgcgggtggtaaagatctgcgtccagcactgaaaatt
gttgatgctcaaggcaacgacgttctgattcctggtacagatatgccagctcagtacttc
ctgccaggtaaagcgattgttcagttggaagatggtactcagattcactctggtgacgcg
ctggcgcgtattcctcaggaatccagtggtaccaaggacatcaccggtggtctgccacgc
gttgctgacctgttcgaagcgcgtcgtccgaaagagccagctatccttgctgaaatcagc
gggatcatctccttcggtaaagaaaccaaaggcaaacgccgtctggtaatctctccactc
gacggcagcgatgcttacgaagagatgattcctaagtggcgtcagctgaacgtgttcgaa
ggcgaagttgtagaacgcggtgacgttgtttccgatggtccagaatctccgcatgacatt
ctgcgtctgcgtggcgtgtatgctgtgactcgttacatcaccaacgaagtgcaggacgtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagtcatcgtgcgtcagatg
ttgcgtaaagcaaccatcgttaacgctggtagctctgacttcctggaaggtgagcaggct
gaatactctcgcgtcaagatcgctaaccgcgaactggaagcgaacggcaagattaacgtg
tccttctcacgtgatctgctgggtatcaccaaagcctctctggcaaccgagtccttcatc
tccgcggcatcgttccaggagacaactcgtgtgcttaccgaagcagccgttgcgggtaaa
cgtgacgaactgcgcggcctaaaagagaacgttatcgtgggtcgtctgatcccagctggt
acgggttatgcgtatcaccaggatcgtatgcgccgtcgtgcagcgggtgaagcacctgtt
gttcctcaggtaactgcagcagatgcaactgccagcctggcagaattgctgaacgcaggt
aacttgggcggtaacgataacgattaa
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integrated database retrieval system
