Buttiauxella agrestis: BADSM9389_39810
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Entry
BADSM9389_39810 CDS
T06676
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bage
Buttiauxella agrestis
Pathway
bage03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bage00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BADSM9389_39810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bage03019
]
BADSM9389_39810
03400 DNA repair and recombination proteins [BR:
bage03400
]
BADSM9389_39810
Enzymes [BR:
bage01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BADSM9389_39810
Messenger RNA biogenesis [BR:
bage03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BADSM9389_39810
DNA repair and recombination proteins [BR:
bage03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BADSM9389_39810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
DUF6972
Cas3-like_C_2
zf-CXXC
zf-CCCH_8
Motif
Other DBs
NCBI-ProteinID:
BCG11270
LinkDB
All DBs
Position
complement(4311662..4313488)
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AA seq
608 aa
AA seq
DB search
MTQAEVINQAVLARQVLQDTFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQIP
ALVFGGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQQEVMAGCRTGQIRLLY
IAPERLMMDNFIDQISHWHLSMVAVDEAHCISQWGHDFRPEYAALGQLRQRLPTVPFIAL
TATADDTTRADIVRLLGLHDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQDQRGKSGI
IYCNSRAKVEDTAARLQSKGISAGAYHAGLEHQVRAEVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVAHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRKCLEEKPVGQL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQQSCGNCDVCLDPPRRYDGLVDAQKAL
SCIYRVNQRFGMGYVVEVLRGANNQRIREFQHDKLPVYGIGRDQTHEHWVSVIRQLIHLG
VVTQNIAQHSALQLTAAARPYLRGEEPLMLAVPRIVAIKSKSSPKVFGGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQMPLSPGEMLGVNGVGTRKLERFGREFMALIR
SHVDGEDE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtgacacaggcggaagtaattaatcaggcagtgctggccagacaggttttgcaagatacc
tttggctatcaacagttccgcccgggtcaggaaaccatcatcgaaacggtgctggaaggg
cgcgattgcctggttgttatgccaaccggcggtggtaaatccctgtgctatcagattccg
gccttggtatttggcgggctgacggttgtcgtctccccgctgatttccctgatgaaagac
caggtcgatcagctgctggcaaacggtgtggcggcggcctgtcttaactccacgcaaact
cgcgaacagcagcaagaagtgatggcgggttgtcgcaccgggcaaatccgcctgctttat
atcgcaccagaacgtttgatgatggataacttcatcgatcaaattagccactggcatttg
tcgatggtggcggtggatgaagcgcactgtatttcacaatggggtcacgatttccgcccg
gaatacgccgctttaggccagttgcgccaacgcctgccgacggtgccatttattgccctc
accgcaacggctgatgacaccacgcgtgcggacattgttcgtctgcttggcctgcacgat
ccgcttattcaaatcagtagctttgaccgcccaaatatccgctacatgctgatggagaag
tttaaacctctcgatcaattgatgcgttacgtacaagaccagcgcggaaaatccggcatt
atttactgcaatagccgcgcaaaagttgaagacaccgccgcgcgtctgcaaagcaaaggg
attagcgctggtgcttatcacgccgggcttgaacaccaggttcgcgccgaagtgcaggaa
aaattccagcgcgacgatctgcaaattgttgtcgccaccgtggcttttggcatgggtatc
aacaaacccaatgtgcggtttgtcgcgcactttgatatcccacgtaacatagaatcttac
taccaggaaaccggtcgcgccgggcgtgacggcctgcctgcggaagcgatgttattttac
gatccggccgatatggcgtggttgcgtaaatgcctcgaagaaaagccggtcgggcaattg
caggatatcgagcgccacaaactcaacgcgatgggcgcatttgccgaagcgcaaacgtgc
cgccgcctggtgttgttgaattactttggagaaggccgccagcaatcttgcggcaactgc
gatgtttgcctcgatccgccgcgtcgctacgacgggctggtggatgcgcaaaaagcactg
tcctgtatttatcgcgtcaatcagcgctttggtatgggttatgtcgtggaagtcctgcgc
ggtgccaataaccaacgtattcgcgagtttcagcacgataaattacccgtttatggcatt
ggccgtgaccagacccacgagcactgggtcagcgttatccgccagctgattcacctcggc
gtggtgacgcaaaatattgcccaacactcggcgttgcaacttaccgcagcggctcgcccg
tatttacgtggcgaagaaccgttaatgctggcggtgccgcgtattgtggccatcaaatcg
aaatccagcccgaaagtgttcggcggcaattacgatcgcaaactgtttgccaaattgcgc
aagctgcgtaaagccattgcggatgaagagaatatcccgccctatgtggtgtttaacgat
gccacgcttatcgaaatggctgaacaaatgccgctctctccgggcgaaatgctgggcgtt
aacggtgtcggtacacgaaaactggaacgctttggccgcgagtttatggcacttattcgt
agccatgtcgacggcgaagatgagtag
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