Buttiauxella agrestis: BADSM9389_40130
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Entry
BADSM9389_40130 CDS
T06676
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bage
Buttiauxella agrestis
Pathway
bage03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bage00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BADSM9389_40130 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bage03021
]
BADSM9389_40130 (rho)
03019 Messenger RNA biogenesis [BR:
bage03019
]
BADSM9389_40130 (rho)
Transcription machinery [BR:
bage03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BADSM9389_40130 (rho)
Messenger RNA biogenesis [BR:
bage03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BADSM9389_40130 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA_22
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
BCG11298
LinkDB
All DBs
Position
complement(4342909..4344168)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENQARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIATSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNEDFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgattactctcggcgaaaat
atggggctggaaaaccaagcccgtatgcgcaagcaggacattattttctccatcctgaag
caacacgcgaagagtggcgaagatatctttggtgacggtgtgctggagatattgcaggac
ggatttggtttcctccgctctgcagacagttcctacctcgccggtcctgatgacatctac
gtttctcccagccaaatccgccgtttcaacctccgcacaggggataccatctccggtaag
attcgtccgccgaaagaaggtgaacgttactttgcgctgctgaaagttaacgaagttaac
tacgacaaaccagaaaatgcgcgtagcaaaatcctgtttgaaaacttaaccccgctgcat
gcaaattctcgtttacgcatggaacgtggtaatggctctaccgaagacttaaccgctcgt
gtactggatctggcatcgccaatcggtcgcggccagcgtggcctgattgtggctccgcct
aaagccggtaaaaccatgctgctgcaaaatattgcaaccagcattgcatataaccaccca
gactgcgtgctgatggttctgctgatcgacgaacgtccggaagaagtgactgagatgcag
cgtctggtgaaaggcgaagttatcgcgtccacctttgacgaacctgcatctcgccacgtt
caggttgctgaaatggtcatcgagaaggcgaagcgtcttgttgaacataagaaagacgtc
attattcttctcgactccattactcgtctggctcgtgcttacaacaccgttgtacctgca
tcaggcaaagtactgacgggtggtgtggatgcgaacgccctgcatcgtccaaaacgtttc
tttggtgctgcacgtaatgtggaagagggtggtagtttgactatcatcgcaacggctctg
gttgataccggttctaaaatggatgaagttatctacgaagaatttaaaggtaccggcaac
atggaattgcatctggcgcgtaaaatcgctgagaaacgcgtattccctgctatcgactat
aatcgttcaggtacacgtaaagaagagctgctgactacccaggaagaactgcagaaaatg
tggatcttacgcaaaatcatccatccaatgggtgagattgatgcaatggaattcctcatc
aacaaattggcgatgacgaaaaccaacgaagacttcttcgatatgatgaagcgctcgtaa
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