Brevibacillus agri: BA6348_01580
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Entry
BA6348_01580 CDS
T05855
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bagr
Brevibacillus agri
Pathway
bagr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bagr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BA6348_01580 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bagr03021
]
BA6348_01580 (rpoB)
03400 DNA repair and recombination proteins [BR:
bagr03400
]
BA6348_01580 (rpoB)
Enzymes [BR:
bagr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BA6348_01580 (rpoB)
Transcription machinery [BR:
bagr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BA6348_01580 (rpoB)
DNA repair and recombination proteins [BR:
bagr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BA6348_01580 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QAV11590
LinkDB
All DBs
Position
complement(300698..304237)
Genome browser
AA seq
1179 aa
AA seq
DB search
MAGKVIQSGRHRQRRTYSRINEVLGLPNLIEIQQKSYQWFLDEGLREMFQDISPIQDFTG
NLVLEFIDYSLGEPKYDVDESKERDVTYAAPLRVKVRLLNKETGEVKEQEVFMGDFPLMT
ETGTFIINGAERVIVSQLVRSPSVYYNTKVDKNGKQTFTATVIPNRGAWLELETDAKDVI
YVRIDRTRKIPVTVLLRALGFGSDIEILNLLGEDEYIKNTLEKDNTDSTEKALIEIYERL
RPGEPPTVENAKSLLISRFFDPKRYDLASVGRYKMNKKLHLKNRLYNQRLAETLVDTTTG
EIFAEAGQMIDRRLLDRILPALEGNVGYLDVRTHGGVLEEDTIRLQSINIFSPIEDGKII
KVIGNGNVDKSVKHITPADIVAAINYFMNLLHGVGSTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSIQDQNQITPQALINIRPVIASLKEFFGSSQLSQFMDQTNPLAELT
HKRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSSFARINDYG
FIETPRRKVDPETGFVLNDIVYLTADEEDVFNVAQANQPLDEDGRFVNDMVICRRKGEIL
SVPRDKVDFMDVSPKQVVSVATALIPFLENDDANRALMGSNMQRQAVPLLIPQAPFVGTG
MEHKAAQDSGVAIVAKHPGQVERVTAREIWVRRYKEIDGKKVAGDIDKYKLHKFIRSNQG
TCINQRPIVRRGDWIEKGDIIGDGPSTEKGELALGRNVIVAFMTWEGYNYEDAILLSEKL
VKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRVGAEIQDGDI
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGSGIVVDVKVFTRENGDEL
PPGVNQLVRVYIAQKRKISVGDKMAGRHGNKGVIARIMPEEDMPFLPDGSPVEIVLNPLG
VPSRMNIGQVLETHLGMAAKLLGIHVATPVFDGARQAEVFETLEEAGLDRDGKTILYDGR
TGEPFDRRVTVGCVYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGMD
VKILSGDEQEIEMREMEDEDEGNGEKLNLVLEGGSLNDE
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggtaaagtgattcaaagtggccgacaccgccagcgtcgtacgtattcacgtatt
aacgaagtgctgggccttccaaatctcatcgagattcagcaaaagtcctaccaatggttc
cttgatgaggggctccgtgagatgttccaagacatttcgccaatccaggacttcactggc
aatctcgtgctggagtttatcgactacagtttgggagagccgaagtacgatgttgacgag
tcgaaagaacgtgacgtcacctatgcggcgcctctgcgtgtgaaggtacgtttgttgaac
aaagagacgggagaagtgaaggaacaagaagtcttcatgggggatttcccgctcatgacc
gaaacgggaaccttcattattaatggtgctgagcgcgtaatcgtcagccagcttgttcgt
tcccccagtgtatattacaacaccaaagtggacaaaaacggcaagcagacgtttacagct
acggtaatcccgaaccggggtgcgtggctggagctggagaccgatgcgaaagacgtaatt
tatgtccgcatcgaccgtacgcgaaaaatcccggtaacggttcttttgcgtgcactcggc
tttggttccgacattgagattctcaacttgctgggtgaagatgagtacatcaagaacacg
ctggaaaaagacaacaccgactctacggaaaaagcgctcatcgaaatttacgagcgtctg
cgtccgggcgagccgccaacagtcgaaaacgcgaagagcctcttgatctctcgcttcttc
gatccaaagcgctatgacctggcatctgtaggtcgttacaaaatgaacaaaaagcttcat
ctgaaaaaccgtctgtacaaccagcgcctggctgagacattggtcgataccaccacaggt
gaaattttcgccgaagcgggtcaaatgattgaccgtcgtctactggatcgcatcctgcca
gcgcttgaaggcaacgtcggctatctggacgttcgcacgcatggcggcgttttggaagag
gatacgattcgtctgcaatccatcaatattttctctccgattgaagatggcaagatcatc
aaggtgatcggaaacgggaacgtagataaatctgtcaagcatattacgccggcggacatc
gtagcggcgatcaactacttcatgaacctgctgcacggtgtcggttccacggacgatatt
gaccacttgggcaaccgtcgtctgcgttccgtgggtgagcttttgcaaaaccagttccgt
atcggtttgtcccgtatggagcgcgtggtgcgcgagcgcatgtccatccaggatcagaac
cagattacgccgcaggctctgattaacatccgtccagtgatcgcatcgctgaaggagttc
ttcggaagctcgcagctttcccagttcatggatcaaacgaacccgttggccgaactgacg
cacaaacgccgtctgtccgctctcggaccgggtggtttgacgcgtgagcgcgcaggcttc
gaagtgcgcgacgttcaccactctcactatggccgtatgtgtccaattgagacgccggag
ggtccgaatatcgggttgattaactcgctgtcgtcctttgcgcgcatcaacgactacggc
tttatcgagacaccgcgccgcaaggtagacccggaaacaggctttgttctgaacgacatc
gtttatctgactgcggatgaagaagacgtgttcaacgtggcgcaggcgaaccagcctctc
gatgaggatggccgctttgtcaacgacatggttatctgccgtcgtaaaggcgagatcctg
agcgtgccgcgcgacaaggtagacttcatggacgtatcgccgaagcaggttgtatccgtg
gcgaccgcgctcattccgttcctggagaacgatgacgcgaaccgcgcgctgatgggttcc
aacatgcagcggcaggccgttccgcttttgattccacaagcgccgttcgtcggtactggt
atggaacacaaagcagcgcaagactccggtgtggcgatcgtcgcgaagcatccgggccag
gttgagcgcgtaacggctcgcgaaatctgggttcgccgctacaaagaaatcgacggcaag
aaagtagccggagacatcgacaaatacaaattgcacaagttcatccgttccaaccaaggt
acttgcatcaaccagcgcccgatcgtaagacgcggagactggattgaaaaaggcgatatc
attggtgacggtccatccaccgaaaaaggtgaattggcactgggacgtaacgtaatcgtc
gcgtttatgacgtgggaaggttacaactacgaggatgcgattctccttagcgagaagctt
gtgaaggatgacgtttacacgtcgatccatattgaagaatacgagtccgaagctcgcgac
accaaactgggtccagaggaaatcacccgcgatattccaaacgtcggggaagacgctctg
aaaaacctggatgagcgcggtattatccgcgtcggtgcggagatccaggacggcgatatc
ctcgttggtaaagtaacgcctaaaggggttaccgagctgactgcggaagaacgcctcctg
cacgctatcttcggggaaaaagctcgtgaagttcgcgatacatccctgcgcgtgccgcac
ggtggttccggtattgttgtagacgtaaaagtatttacgcgtgagaacggcgacgagctg
cctccaggcgtaaaccaactggtacgtgtctatatcgcccaaaaacggaaaatttccgtg
ggtgacaaaatggccggacgacatggtaacaaaggggttatcgcgcggatcatgccagaa
gaggatatgccattcctcccagacggctctccggttgaaatcgtcctgaacccgctgggc
gtaccttcgcgtatgaacatcggtcaggtattggagacgcacctgggtatggcggcgaag
cttctcggcatccacgtggcgacacctgtattcgacggtgcccgtcaggcggaagtattc
gagacgctggaagaggctggcctcgaccgcgatggaaaaaccatcttgtacgatggacgt
acaggtgaaccgttcgatcgtcgggtaacggtcggatgcgtatacatgctgaaactggct
cacttggtggatgacaaaatccacgctcgttctactggtccatactctctcgttacccag
cagccgttgggtggtaaagcccaattcggcggacagcgtttcggggagatggaggtttgg
gcattggaagcttacggtgcagcctacaccttgcaggaaattctcaccgtcaagtcggat
gacgtcgtgggccgcgtgaagacgtacgaagcgattgtcaaaggtgaaaacgtaccagag
ccaggtgttcctgaatcgttcaaggttcttatcaaggaactgcaaagcttgggtatggac
gtgaagatcctgtccggtgacgagcaggagattgaaatgcgggaaatggaagacgaggat
gaaggcaacggtgaaaaactgaacctcgttctcgaaggtggaagcttgaacgacgagtaa
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