Brevibacillus agri: BA6348_05940
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Entry
BA6348_05940 CDS
T05855
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bagr
Brevibacillus agri
Pathway
bagr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bagr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BA6348_05940 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bagr03019
]
BA6348_05940 (rnr)
03016 Transfer RNA biogenesis [BR:
bagr03016
]
BA6348_05940 (rnr)
Enzymes [BR:
bagr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BA6348_05940 (rnr)
Messenger RNA biogenesis [BR:
bagr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BA6348_05940 (rnr)
Transfer RNA biogenesis [BR:
bagr03016
]
Prokaryotic type
tRNA degradation factors
BA6348_05940 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
CSD
S1_RRP5
OB_Dis3
RNase_II_C_S1
TFA2_Winged_2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QAV12348
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All DBs
Position
1191606..1194110
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AA seq
834 aa
AA seq
DB search
MTDQEKILAFMREQAYHPMTVKELEEAFELKDSASFKELVKTLNALEASGEVIRTRANRY
GVPEKMNLVRGRLQSHPKGFGFIIPETPDMEDIYVHANDMNGAIHGDTVLVRVEKEAGGN
RLEGRIIRVVERGMTQVVGTFKDETYYAFVIPDEKRIGKDIFIPKNAYNGAVDGHKVVAN
IVRYPEGRVNPEGEIVEILGHKNDPGVDILSIIRKFNLPEAFPEDVLAEAEAAPDEISEE
EIKGRRDLRDRMMVTIDGADAKDLDDAVSLEVLENGNVRLGVHIADVSYYVREKSALDNE
AYRRGTSVYLVDRVIPMLPHRLSNGICSLNPKVDRLTISCDMEMDQNAQLVKYDIFLSVI
RTNERMTYADVRSILEDKDEALIEKYSELVPMFQEMEKLALKLRSKRMQRGAIDFDFREA
KIYVNDEGTPTDIGFRTRSIAEQIIEEFMLAANETVAEHFHWMKQPFMYRIHEDPNAEKL
MAFMEFITNFGYSIRGKGNSVHPRALQQLLEEVKGTPEEIIISTVMLRSMKQARYDAESL
GHYGLSTEFYTHFTSPIRRYPDLIVHRRIREWIEQGNNLSEKRLAYWAEQMPIIAEHASQ
RERLAVDAERETDDLKKAEFMKERVGEEFEGVISSVTSFGLFVELPNTIEGLVHISFLTD
DYYHYHEKMYALVGERTGKQYRIGDVVQVRVANVNVDERTIDFEIVGMTKAAGFRGSRER
TPRVIDGRGTGRKPTRGKQDRSRGGRPERPDRQKAKKHPAEIRQKYKDRRKGEGNKASRG
PASGPATGNKDVLPIGQGGEEAQGEQQKGFWEDFVRSKKKSRKNVVSQAKRKRR
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgacagatcaagaaaagatactcgcgttcatgcgggagcaagcttatcaccctatgacg
gtgaaggagctggaggaagcgtttgagctcaaggactcggcttccttcaaggagctggtg
aaaacgctgaacgcactggaagcgagcggcgaggtaattcgcacgcgtgcgaaccgatac
ggcgtgccggaaaaaatgaacctggtgcgcgggcgtctgcaaagccatccaaaaggcttc
ggatttattattccggaaacgcctgacatggaagatatatacgtccacgccaacgacatg
aatggagcgattcacggcgacaccgtgctcgtgcgtgtcgagaaggaagcgggcggcaat
cgcctggaagggcgaattattcgcgtcgtcgaacggggcatgacccaggttgtggggacg
ttcaaggatgagacgtactacgcgtttgtgattccggatgagaaacggatcggcaaagat
atttttatcccgaaaaacgcatataacggagcggtagacggccacaaggtcgtcgccaac
atcgtccgctacccggaaggacgggtcaatcccgagggagagatcgtagaaattctgggg
cataaaaacgatccgggtgtggacattttgtccatcatccgcaagttcaacctgccggaa
gcatttccggaggatgtgctggccgaggcagaagcggcgccggacgagatttcggaagag
gagatcaagggacgccgcgacctgcgcgaccggatgatggtcaccatcgacggagcagac
gccaaggacctggacgacgccgtttcgctcgaagtgctggaaaacggcaatgtcaggctc
ggtgtgcatattgccgacgtcagctattacgtccgcgaaaaatcggctctggataacgaa
gcgtatcgccggggcacgagcgtctatctggtcgaccgcgtcatcccgatgctgccgcac
cgtttgtccaacgggatatgcagtctgaatccaaaggtagaccgactgacgatctcctgc
gacatggagatggaccaaaacgcgcaactcgtgaagtacgatatttttctcagcgtgatt
cgcacgaacgaacgcatgacgtatgccgatgtgcgcagcatcctggaagacaaggacgaa
gccttgatcgagaagtacagcgagctcgtcccgatgttccaggagatggagaagctggcg
ttgaagttgcgttccaaacggatgcagcgcggcgcaatcgacttcgatttccgcgaagcg
aaaatttacgtcaacgatgagggcaccccgacagacatcgggttccgcacgcgctccatc
gcggagcagatcattgaggaatttatgctggcggccaacgaaacagtggccgagcatttc
cactggatgaagcagccgtttatgtaccggattcacgaagacccgaacgccgaaaagctg
atggccttcatggagttcatcaccaacttcggctactcgatccgcggcaagggcaactcc
gtccacccgcgcgccctgcagcagcttttggaagaggtaaaaggcacgccggaagagatt
atcatcagcacggtcatgctacgttccatgaagcaagcgcgctacgacgcggaaagtctg
ggtcactacggcttgtccaccgagttttacacgcactttacgtcgccgattcgccgctac
cccgacctcatcgtccaccgccgcattcgcgagtggatcgagcagggcaacaacctgtcg
gagaagcgcctggcgtactgggccgagcagatgccgattatcgccgagcacgcctcccag
cgcgagcggctggcggtagatgccgagcgcgagacagacgacctgaaaaaagccgagttc
atgaaggagcgcgtcggagaggagttcgagggcgtcatttccagtgtgacctcgttcggg
ctgtttgtggagctgcccaacacgatcgagggcctggtgcacatcagcttcctgaccgac
gactactatcattaccacgaaaaaatgtacgcgctggtaggcgagcggacgggcaagcag
taccgcatcggggatgtagtgcaggtccgcgtggcgaacgtcaacgtggatgagcgcacc
atcgacttcgagatcgtcggcatgaccaaggcagccggattccgcggcagccgcgagcgc
acgccgcgcgtcatcgacggccggggcacaggtcgcaagccgactcgcggcaagcaggat
cgctcccgcggtggccgtcccgagcggccagatcgccaaaaggccaaaaagcacccggcg
gaaatccgccagaagtacaaggatcgccgcaaaggcgaagggaacaaagcttcgcgcggc
ccagcttccggtccagcaactggaaacaaagacgtcctgccgattgggcagggtggagaa
gaggcccaaggggagcagcagaagggcttctgggaagattttgtccgctccaaaaagaaa
agccgcaagaatgtagtcagccaggcgaaacggaagcggcgttaa
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