Bacillus sp. HBCD-sjtu: CU648_12560
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Entry
CU648_12560 CDS
T11603
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
bahb Bacillus sp. HBCD-sjtu
Pathway
bahb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bahb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CU648_12560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bahb03400
]
CU648_12560
DNA repair and recombination proteins [BR:
bahb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CU648_12560
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CU648_12560
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_7
AAA_19
AAA_30
AAA
AAA_22
DUF1280
UFL1
Kinesin
HH_RND_rel
UB2H
AAA_16
TrwB_AAD_bind
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AUD23299
LinkDB
All DBs
Position
complement(2278519..2280495)
Genome browser
AA seq
658 aa
AA seq
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MERQFEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPT
LVMAHNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEID
KLRHSATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQ
YGRNDIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDH
VAIFPASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREM
GFCSGIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQV
LVDHGFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVIEQIIRPTGLLDP
PIDIRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVK
TLERIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR
AARNENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATT
AAEEPETYEATPAKKMTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAEG
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
ttggaacgtcaatttgaaattgtctcagcgtattccccgcaaggtgatcagccggtagct
atagagaagcttgtagagggaattaatagtggaaagaaaaagcaagtgttgcttggggcg
acaggaacgggtaagacatttacgatttcaaatgtcattaaagaagtgcaaaagccaacg
cttgtcatggctcacaataaaacgttagcaggacagttatatagtgagttgaaagacttt
tttccgaataatgcagttgaatattttgttagttattacgattattatcagccagaagcg
tatgtgccacaaacagatacatttattgaaaaagacgcacagattaatgatgaaattgat
aaattacgtcactcagcaacgtctgcattatttgaacgggatgatgtaattattgttgcg
agtgtttcatgtatatatggtttaggttctccagaagaataccgcgagttagttgtttca
cttcgagttggtatggaaaaggaccgcaatcaattgcttcgtgaacttgttgatgtgcag
tatggacgtaatgatattgatttcaagcgtggtacattccgtgtgcgcggagatgtagtt
gaaatcttcccggcatcacttgacgagcattgtattcgaattgagttttttggcgatgaa
attgatcgtattcgcgaagtaaatgctttaacgggggaagtattagcagaacgtgatcat
gtagcaatcttcccagcatctcacttcgttacacgtgaagaaaagatgaaggtcgctatt
gaaaatatagaaaaagaattagaagagcgtttaaaggaattaaatgataatggcaagttg
ttagaagcgcagcgtatagagcagcgtacacgttatgatttagaaatgatgcgcgagatg
ggcttttgttcaggtattgaaaactattcccgccatttaacacttcgtccggcgggtgca
acgccgtatacgctattagactatttcccggaagatttcttaatcgttatggatgagtcg
cacgtatcagtgccgcaagtaagagcgatgtataacggggaccaagcgcgtaaacaagtg
cttgtggatcatggattccgtcttccatcagctttagataatagaccgctcacatttgat
gagtttgaagagaaaacgaatcaagttatttacgtttcagcaacgccaggaccgtatgaa
ttagagcagtcgccagaagtaatagaacaaattattcgtccaacagggcttttagatccg
ccaattgatatacgaccaattgaagggcagattgacgatttattaggagaaattcaagat
cgcattgcaaaaaatgaacgtgtattaattacaactttaacgaagaagatgtcagaggat
ttaacagactacttaaaagatgtaggaattaaggtgaattatctgcattctgaagtgaaa
acgttagaacgtattgaaattatacgagatcttcgccttggtaagtttgatgttctcgtt
ggtattaacttattgcgagaaggattagatattccagaagtatcccttgtagctatttta
gatgctgataaggaaggattcttgcgttcagagcgttcgttaattcaaacaattggccgt
gcagcacgtaatgaaaacggtcgcgttattatgtacgcagatcgtataacgagatcgatg
gggattgcgattgaagagacgaagcgtcgtcgtagtatacaagaagcttacaatgaagag
catggtattacgccaaaaacgattcaaaaaggtgtgcgtgatgtaatccgtgcaacgaca
gctgctgaagagccggaaacatatgaagcgacgccagctaagaagatgacgaaaaaagag
cgtgaaaagacaattgcgaagatggaagcagaaatgaaagaagcagcaaaagcgttagac
ttcgagcgtgcagctgaattaagagatttactattagaattaaaagcggaagggtga
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