| Entry |
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| Symbol |
rpoC
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta
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| KO |
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| Organism |
baj Buchnera aphidicola (Cinara tujafilina)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:baj00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BCTU_018 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:baj03021]
BCTU_018 (rpoC)
03400 DNA repair and recombination proteins [BR:baj03400]
BCTU_018 (rpoC)
Enzymes [BR:baj01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BCTU_018 (rpoC)
Transcription machinery [BR:baj03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BCTU_018 (rpoC)
DNA repair and recombination proteins [BR:baj03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BCTU_018 (rpoC)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
complement(21243..25505)
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| AA seq |
1420 aa
MFKNRTISLKEILKLFKKNKNTEEFNSIRISLASPDVIRSWSFGEVKKPETINYRTFKPE
RDGLFCSRIFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQSKVRRERMGHIELASPIA
HIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVINGGMTHFEKNHILTEEQYLQALEEF
GNEFSAQMGAEAIQNLLKNIHLKNTCHILKEEILETNSETKKKKITKRIKLIESLLVSKN
KPEWMILTVLPILPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELSAPDIII
RNEKRMLQEAVDALLDNGRRGRSITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGR
SVITVGPYLRLHQCGIPKKMALELFKPFIYGKLEKRNLATTIKAAKKMVEKEEAVVWDIL
DEIICKHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAIHIPL
TKEAQLEARSLMMSTNNILSPANGEPIIVPSQDVVLGVYYMTREKINGKGEGMLLSGSKE
AERVYELGVAELHSKVRIKITEYYYKNKEEKKLNKKNKIINTTIGRAIFWNIVPHGLPFH
LVNKTLGKSDISGLLNYCYRTLGLKKTVDFADQIMYIGFDYAARSGSSVGIDDIVIPQEK
TEIISAAEYEVSEIHEQFQTGLVTFGERYNKVIDIWAIANEKVAKAMMKNLSTDNIINKK
GESIQQTSFNNIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL
QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTESDCKTSEGIIMHSLIEGGD
IKETLRERVLGRLTAENILKPNSKKIIIPRNTLLHEKWCDILEKYFIDKIKVRSVVNCET
IFGVCAYCYGRDLARGTLVKKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRTALESSI
QIRKNGIVHLSNSKFIINSNKKIIITSRNTELKIIDKFGKTQESYKIPYGAVLVKGEGES
VKSGEIIAKWDPHTIPVITEVNGYVKFIDMVDGQSIIRQTDELTGLSSVVVLDISERTIT
SKDLRPSLKIISKEGYDIFIPGTDMPAQYFLPGKAIIQLENGIKIYSGDTLARVPQESGG
TKDITGGLPRVADLFEARKPKELAILAEISGIISFGKETKGKRRLILTPLTGCHIHEEMI
PKWRQLNVFEGERVEKGDVISDGPESPHDILRLRGIQAVTKYIVHEVQEVYRLQGVKIND
KHIEVILRQMLRKATILNSGNSNFLPGEQLEYSNIITENKKLEKIKNKSNFLRDLLGITK
ASLATESFISAASFQETTRVLTESAVAGKKDQLRGLKENVIVGRLIPAGTGYSYHKNRIK
NHLEKTVLKKNRKDKQNKSSISAEEAAANLSELLNSAEKI |
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| NT seq |
4263 nt +upstreamnt +downstreamnt
ttgtttaaaaataggactatctccttgaaagaaatattaaaactttttaaaaaaaacaaa
aacactgaagaatttaattcaattagaatttcattagcatcaccagatgttatacgctct
tggtcttttggagaagtaaaaaaaccagaaactataaattatcgtacatttaaacctgaa
cgtgatggattattttgttctcgtatttttggtccaattaaagattatgaatgtttatgc
ggaaaatataaaagattaaaacatagaggtgtaatatgtgaaaaatgtggcgttgaagtt
acacaaagcaaagttcgccgagaacgtatgggacatattgaattagcctctccaatagcc
catatttggtttttaaaatcattaccttctcgaattggtttattgttagatatgccttta
cgagacatagaaagagtactatattttgaatcatacgtcgtaataaatggcggtatgact
cattttgaaaaaaatcatattttaacagaagaacaatatttacaagcattagaagaattt
ggaaatgaattcagtgctcaaatgggtgctgaagctatacaaaatttacttaaaaatata
catttaaaaaatacatgtcatatacttaaagaagaaattttagaaactaattctgagact
aaaaaaaagaaaataacaaaaagaattaaattaatagaatcattattagtatccaaaaat
aaacccgaatggatgattctaacagttttacctattcttcctcctgacctaagaccatta
gtgcctcttgatggagggagatttgcaacatcagatttaaatgatctatatcgaagagtg
ataaacagaaataatcgactaaaacgtttattagaattatcagctccagatattataatt
cgcaatgaaaaaagaatgctacaagaagctgtagatgcattattagataatggtagacgt
ggacgttctattacaggatctaataaaagaccgttaaaatcattagccgatatgattaaa
ggaaaacaaggtcgatttcgacaaaatttactaggaaaaagagtagactattcaggaaga
tctgttatcactgttggtccatatttacgattacatcaatgcggtattccaaaaaaaatg
gcattagaactttttaaaccttttatatatggaaaattagaaaaaagaaatttagctact
acaataaaagcagctaaaaaaatggttgaaaaagaagaggctgtagtatgggatattctt
gatgagattatttgtaaacatcctgttttgttaaatcgagctcccactttacatcgttta
ggtattcaggcatttgaacctattttaattgaaggtaaagcgatacaattacatccatta
gtatgtgcagcatataatgctgattttgatggtgatcaaatggctattcatataccttta
actaaagaggctcaattagaagcacgttctctgatgatgtcaacaaacaatatattatct
ccagctaatggagaaccgattattgtaccctctcaagatgttgttcttggagtttattat
atgacaagagaaaaaataaacggaaaaggagagggaatgttattatcaggatctaaagaa
gcggaacgtgtatatgaattaggagtagccgaattacactctaaagtacgtataaaaatt
acagaatattattataaaaataaagaagaaaaaaaactgaataaaaaaaataaaattatt
aatactactattggaagagcaattttctggaatattgttccgcacggattaccatttcat
ttagtaaataaaacgttaggaaaatctgatatttcaggtttattaaattattgttatcgt
actttaggtttaaaaaaaacagtagattttgctgatcaaattatgtatataggatttgat
tatgcagcacgatcaggttcatctgttggaatagatgatattgttatacctcaagaaaaa
acagaaattatttctgcggcagaatatgaagtatcagagatacatgaacaatttcaaaca
ggattagtaacatttggagaacgatataataaagtcatagatatttgggcaattgctaat
gagaaagtagctaaagctatgatgaaaaatttatctacagataatataattaataaaaaa
ggagaatcaatacaacaaacatcttttaataatatttttatgatggccgattcaggtgct
cgaggatcagctgcacaaattagacaattagcaggtatgagaggattgatggctaaaccg
gatggatcaattattgaaacaccaattacagctaattttcgagagggattaaatgtttta
caatattttatctcaacccatggagcccgcaaaggattagccgataccgcattaaaaact
gcaaattctggttatttaacccgtcgattagtagatgtagctcaagatttagtagtcaca
gaaagtgattgtaaaacttcggaaggtattattatgcattctttaatcgaaggaggagat
attaaagaaacattacgagaaagagtattaggacggttaacagccgaaaacatactaaaa
cctaactctaaaaaaatcattataccacgaaatactttattgcatgaaaaatggtgtgat
attttagaaaaatattttatcgataaaattaaagtaagatctgttgtaaattgtgaaaca
atttttggagtttgtgcttattgttatgggcgtgatttagctcgaggaacgttagtaaaa
aaaggtgaagcaatcggtgtaatagccgctcaatcaataggcgaacctggtactcaacta
acaatgcgtactttccatataggaggggcagcatctagaacagcattagaatccagcata
caaatacgaaaaaatggaattgttcatttaagtaattcaaaatttattataaattctaat
aaaaaaattattattacatctagaaatactgaattaaaaataatagataaatttggcaaa
acacaagaaagttataagattccatatggagcagtgttagtaaaaggagaaggagaatca
gtaaaatccggagaaattatagcaaaatgggatccacatactattcctgtaattacagaa
gttaatggatatgttaaatttattgatatggtagacggacaaagtattatacgacaaaca
gatgaattaaccggattatcttctgtagtagttttagatatttctgaacgtacaatcaca
agtaaagacttacggccatcattaaagataatcagtaaagaaggatatgatatttttatt
ccagggactgatatgccggctcaatattttttacctggaaaagctatcatacaattagaa
aatggtataaaaatttattctggagacacattagcaagagtacctcaagaatctggagga
acaaaagatattaccggaggattaccaagagtagctgatttatttgaagcccgaaaacca
aaagaattagcaattttggctgaaattagcggaattatttcttttggaaaagaaacaaaa
ggtaaaagaagattaattttaactcccctcaccggatgtcatatacacgaagaaatgatt
ccaaaatggcgtcaattaaatgtttttgaaggagaacgtgtagaaaaaggtgatgtgatc
tcagatggcccggaatcaccacatgacatactacgattgagaggaattcaagcggttaca
aaatatatagtacatgaagtacaagaagtttacagattacagggagtaaaaatcaatgat
aaacacattgaagttattttacgtcaaatgttacgaaaagctacaatattaaattctgga
aattcaaattttttacccggcgaacaattagaatattcaaacattataacagaaaacaaa
aaattagaaaaaataaaaaacaaaagcaattttttaagagatttattaggtattacaaaa
gcatctttagctaccgaatcatttatttccgctgcatcttttcaagaaacaactagagta
cttacagaatctgctgtagcaggtaaaaaagatcaattacgcgggttaaaagaaaatgtt
attgttggaagattaatacctgctggaactggatattcttatcataaaaatagaataaaa
aatcatttagaaaaaacggttcttaaaaaaaacagaaaagataaacaaaataaatcatca
attagtgctgaagaagctgcagcaaacttatcagaactattaaattctgccgaaaaaata
taa |
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