Buchnera aphidicola (Cinara tujafilina): BCTU_241
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Entry
BCTU_241 CDS
T01528
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
baj
Buchnera aphidicola (Cinara tujafilina)
Pathway
baj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCTU_241 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baj03019
]
BCTU_241 (deaD)
03009 Ribosome biogenesis [BR:
baj03009
]
BCTU_241 (deaD)
Enzymes [BR:
baj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BCTU_241 (deaD)
Messenger RNA biogenesis [BR:
baj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BCTU_241 (deaD)
Ribosome biogenesis [BR:
baj03009
]
Prokaryotic type
rRNA helicases
BCTU_241 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AEH39822
UniProt:
F7WZG0
LinkDB
All DBs
Position
complement(287065..288876)
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AA seq
603 aa
AA seq
DB search
MTQIHNSFSIFGLNSLLLKSLDDLGYQKPSPIQSSCIPYLLLGQDVLGMAQTGSGKTAAF
ALPLLHNIKNIFKSPQILVLTPTRELAVQVAEAFSEFSKYIKGINVLPLYGGQKYEVQLR
LLRQGPQIVVGTPGRLLDHLKRGTLSLTHLNSFVLDEADEMLRMGFIEDVENIMSKLPKK
HQTALFSATMPDIIRRISKRFMVKPVEIKIQSTGITRPNIQQSYWMVYGKKTEALIRFLE
MEDFSATIIFVKTKSATLEVADVLEKNGYNCAALNGDMNQSLREQTLDRLRNGKLDILIA
TDVAARGLDVDRISFVINYDIPMDAESYVHRIGRTGRAGRTGRALLFVENRERRLLRNIE
RIVKLTIPEVILPKSELLSQRRLQKFSEKIQKELNSPDLEEYRLLLPKFKLKEPVNFEKL
SAALLKLAQGERPLIVKPDKKIFPSFKKNNSSIAFLRTVRRKKHIKTLDNKFRSTTKDFQ
KTDEIQTFRIEVGKDDGIEIRHIVGAIANEGNISSQRIGNVRVFSTYSTVELPKNISNSL
LNHLSRTRILNKQMCIKPIKNSKSNDIRKNFINRMGYFSKKIGLDEYKFFNIYTKNIIKL
INF
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgactcaaattcataattcattttcaatatttggtttaaattctttattattaaaatct
ttagatgatttaggttatcagaaaccttctcccattcaatcttcttgtattccttatttg
ttattaggacaagatgtattagggatggctcaaacgggaagtggaaaaactgctgcattt
gcattaccgttattgcataatataaaaaacatttttaaatctccacaaattttagtatta
actccgacccgtgaattagcggttcaagtggcagaagcattttcagaattttcaaaatat
ataaaaggtataaatgttttacctttatatggaggtcaaaaatatgaagtacaattaaga
ttattacgtcaaggaccacaaattgtagtaggaactccgggtcgtttattagatcattta
aaaagaggaactttaagtttaacgcatctaaatagttttgttttagatgaagctgatgaa
atgttgcgcatgggatttattgaagatgtagaaaatattatgtcaaaacttccaaaaaaa
catcaaacagctttattctctgctacgatgcctgatattattcgtagaatttcaaaacgt
tttatggttaaaccggtagaaataaaaattcaatcgactggaattacgcgacctaatatc
caacaaagttattggatggtttatggaaaaaaaactgaagcgttaattcgatttttagaa
atggaagatttttcagctacaattatttttgtaaaaactaaaagcgctactttagaggtc
gctgatgttttagaaaaaaatggatataattgcgcggcattaaatggcgatatgaatcaa
tcattaagagaacaaactttagaccgattaagaaatggaaaacttgatattttaatcgcg
acagatgttgcagctcgcggattagatgtcgatcgtattagttttgtaattaattatgat
attccaatggatgcagaatcgtatgtacatcgtattggtagaacaggtcgtgctggtcgt
actggaagagcgttattatttgtagaaaatagagaaagaagattattacgtaatattgaa
agaattgtaaagttaacaataccagaagtaatcttacctaaaagtgaattattaagtcaa
cggagattacaaaaattttcagaaaaaatacaaaaagaacttaatagtccagatttagag
gaatatcgtttattgttaccaaaatttaaattaaaggaaccagtaaattttgaaaaatta
tccgctgctttattaaagttagcgcaaggagagagacccttaattgttaagcccgataaa
aaaatatttccatcttttaaaaaaaataatagttctattgcttttcttcgtaccgttcgt
cgtaaaaaacatattaaaactttagataataaatttcgttctacaacaaaagattttcaa
aaaacagatgaaatacaaacatttcgaattgaagttggaaaagatgatggaatagaaatt
cgtcatattgttggagctattgctaatgaaggaaatattagtagtcaacgcattggtaat
gtaagagtattttctacatattctacagtagagttaccgaaaaatatttctaatagttta
ttaaatcatttatctcgaactcgtatattaaataaacagatgtgcattaaaccgataaaa
aatagtaaaagtaatgatattcgaaaaaattttattaatagaatgggatatttttcaaaa
aaaataggtctagacgagtataaattttttaatatatatactaaaaatataattaaatta
ataaatttttaa
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