Buchnera aphidicola JF99 (Acyrthosiphon pisum): CWS_00170
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Entry
CWS_00170 CDS
T02354
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bajc
Buchnera aphidicola JF99 (Acyrthosiphon pisum)
Pathway
bajc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bajc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CWS_00170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bajc03021
]
CWS_00170
03400 DNA repair and recombination proteins [BR:
bajc03400
]
CWS_00170
Enzymes [BR:
bajc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CWS_00170
Transcription machinery [BR:
bajc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CWS_00170
DNA repair and recombination proteins [BR:
bajc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CWS_00170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
ADP67014
LinkDB
All DBs
Position
complement(36321..40544)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKSQTKNEDFDAIKISLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQSKVRRERMGHIELSSPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIETGMTNLEKRQILTEEQYLDSLEEFGDEFHATM
GAEAIQFLLKDINLVQECNVLRIELNETNSETKRKKLTKRIKLLESFIQSHNKPEWMILN
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LHLHQCGLPKKMALELFKPFIYGKLEVRGLATTIKAAKKMVEREEAIVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLESQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREKINGKGEGMLLNGSNEAEKVYRLG
IAELHSLVKVRIIEYKKNEDKSFTAIKKIIPTTIGRAILWMIIPKGLPFSIVNQTLGKKD
ISKMLNTCYRILGLKSTVFFADQIMYTGFAYAARSGASVGIDDMVIPEKKANIINEAEIE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMQNLSTESVINKKGYKQKQISFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTQDDCRTHEGILMTPLIEGGDVKEPLRERVL
GRVTAENIIIPNTKNILIKRNTLLNEKWCDLLEHNSIDNVKVRSVVNCDTDFGVCAYCYG
RDLARGNLVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNQGIINL
NNAKFVINSAGKTVITSRNVELNIIDNFGRTKESYKVPYGAIMAKGDGEKVNSGETVAKW
DPHTMPVITEVNGLVRFVDMIDGQSITRQADELTGLSSIVILDTAERMSSGKDLRPALKI
IDCNGNDVLISGTDMPAQYFLPGKAIVQLDDGVQISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKELAILAEISGIISFGKETKGKRRLVITPVDGSDSYEEMIPKWRQLNVFE
GERVDRGDVISDGPESPHDILRLRGVQAVTRYIVNEVQEVYRLQGVKINDKHIEVIIRQM
LRKATVVKSRDSDFLEGEQVEFSHIKISNRMLDKKKKMPATFSRDLLGITKASLATESFI
SAASFQETTRVLTESAVAGKRDELRGLKENVIVGRLIPAGTGYAYHKERLNRRQKKHNNP
TVSSSQISAEEASASLSELLNSALIEK
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttactaaaatttctaaaatcccaaactaaaaatgaagattttgatgctatt
aaaatctcgttagcttcacctgatatgatcagatcatggtcatttggggaagtcaaaaaa
cctgaaactattaattatcgtacatttaaacctgaacgagatggattattttgtgctcgc
atttttggtccagtaaaagattacgaatgtttgtgtggtaaatataaaagattaaaacat
agaggagtaatttgtgaaaaatgtggtgttgaagtaacacaaagcaaagttagacgtgaa
cgaatgggtcatatagaactttcttcacctacagctcatatttggttcttaaaatctttg
ccatcaagaataggtttattattagatatgcctttaagagatattgaaagagtactatat
tttgaatcttatgttgtcatagaaacaggcatgactaatcttgaaaaacgtcaaatttta
accgaagaacaatatctagattcattggaagaatttggagatgaatttcatgctacaatg
ggagcggaagcgattcaatttttattgaaagatattaatttagtacaagaatgtaatgta
ttgagaatagaactaaatgaaacaaattctgaaacaaaaagaaaaaaattaacaaaaaga
attaaactattagaatcttttattcaatcgcataataaacctgaatggatgattcttaac
gtattaccagtattaccacctgatctaagaccattagtaccattagatggaggtagattt
gcaacatcagatttaaatgatttgtatcgtcgagtgatcaatagaaataatcgtcttaaa
cgtttattagatttagcagctccagatataattgtacgcaatgaaaaaagaatgttacaa
gaagcagtagatgctttattagataatggtcgaagaggtagagcaattacaggatcaaac
aaaagacctcttaaatcattagctgatatgattaaaggaaaacaaggaagatttcgacaa
aatcttcttgggaaacgtgtagattattctggtcgttcagtaattactgtaggtccttat
cttcatttgcatcaatgtggtctacctaaaaaaatggcattagaactttttaaaccgttc
atatatggcaaattagaagtgcgtggtttagccactactattaaagcagcaaaaaaaatg
gtggaaagagaagaagcaatagtgtgggatattttagacgaagtaatccgcgaacaccca
gttcttttaaatcgtgcacctactttacatcgattaggtattcaagcatttgagccagtc
cttatagaaggaaaagctattcaacttcatccattagtatgtgcagcttacaatgctgat
tttgatggagaccaaatggctgtccatgtcccattaactctagaatcacagttagaagct
agagctttaatgatgtcaactaataacattttatcacctgcaaatggtgaaccaattatt
gtaccttctcaagatgttgttttagggttgtattatatgactcgcgaaaaaatcaatgga
aaaggtgaaggtatgttattaaatggttctaatgaagcagaaaaagtataccgtttaggt
attgctgaactacattcactagtaaaagttcgaataatagaatataaaaaaaatgaagat
aaaagttttactgcaataaaaaaaataattcctactactataggtcgagcaattttgtgg
atgattatcccaaaaggactaccttttagtattgttaaccaaactttaggtaaaaaagat
atttctaaaatgcttaatacttgttatcgtattttaggactgaaatctactgtttttttt
gctgatcaaattatgtacaccggattcgcttatgcagcaagatctggagcttcggtaggt
attgatgatatggtaataccagaaaaaaaggcaaatatcatcaatgaggctgaaattgaa
gttgctgaaatacaagaacaattccaatctggattagtgactgcgggtgaaagatataat
aaagttattgatatttgggcggcagctaatgaacgagtagcaaaagcgatgatgcagaac
ttatctacagaatctgttatcaacaaaaaaggttacaaacaaaagcaaatatcttttaat
agtatatttatgatggctgattcgggggcacgtggttctgccgcacaaattcgtcaatta
gctggtatgagaggattgatggccaaacctgatggttctattattgaaacaccaattaca
gctaattttagagaaggtttgaatgtattacaatattttatttctacacatggagctcgt
aaaggattagctgatacagcactaaaaactgcaaactctggatacttaacacgtcgttta
gtagatgtagctcaagatttagttgtaacacaagatgattgtcgaacacatgaaggaatt
ttaatgactccattaattgaaggaggagatgtaaaagaaccactacgtgaacgtgtttta
ggtcgtgttactgcggaaaatattattattccaaatactaaaaatatattaatcaaaaga
aatacacttctaaatgaaaaatggtgtgatcttttagagcacaattctatagataatgtc
aaagtacgatcagtagtaaattgtgatactgattttggtgtatgcgcttactgctatggt
cgagatttagcacgaggtaatttagtcaataaaggagaagcaattggggtaattgctgca
caatctataggagagccaggcacacagctaactatgagaaccttccatattggtggtgca
gcatccagagctgcagcagaatctagtattcaagtaaaaaatcaaggtattataaatctt
aataacgcaaaatttgtaattaattctgctggtaaaacagtaattacttcaagaaatgta
gaactaaatattatcgataattttggaagaacaaaagaaagctataaagttccttatgga
gctattatggctaaaggagacggtgaaaaagtaaattcaggggaaactgttgcaaaatgg
gatccacataccatgccagttattactgaagttaatgggttagtacgttttgtagatatg
attgatggtcaaagtattacaagacaagcagatgaactaacaggtttgtcttctatagta
atattagatacagcagaaagaatgtctagtggtaaagatttaagaccagcattaaaaatt
atcgattgtaatggaaatgatgttcttatttcaggaacagatatgccggctcaatatttc
ttacctggaaaagcaatcgttcaacttgatgacggagtacaaatcagttcaggcgataca
ttagcgagagtcccacaagaatctggaggtactaaagacataacaggtggattaccaaga
gtagcagatttatttgaagctagacgcccaaaagaattagcaattttagcggaaattagt
ggaattatatcttttggaaaagaaactaaaggtaaaagaagattagtaattacaccagta
gatggtagtgattcttatgaagaaatgattccaaaatggagacaattaaatgtatttgaa
ggagaacgagtagatcgaggagatgtcatatctgatggaccggaatcaccacatgatatc
ttaagattaagaggtgttcaagctgtaactagatatatagtgaatgaagtacaagaagta
tatcgtttacaaggtgtaaaaattaacgacaaacatattgaagtaattatacgacaaatg
cttcgaaaagctactgtagttaaatcaagagattcagattttctggaaggtgaacaagtt
gaattttctcatataaaaatatcaaatcgcatgttagataaaaaaaagaaaatgccagct
actttttcaagagatttattaggaattactaaagcatcacttgcgacagaatcttttata
tctgcagcttctttccaagaaacaacaagagtattaacagaatctgcagttgcaggaaaa
agagatgaattaagaggattaaaagaaaatgtaattgttggacgtttaattcctgcagga
acaggatatgcatatcacaaagaacgtttgaatcgtcgtcaaaaaaaacataacaatcca
acagttagcagttctcaaattagtgctgaagaagcttctgctagtctttcagaattatta
aattctgctcttatagaaaaataa
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