Buchnera aphidicola JF99 (Acyrthosiphon pisum): CWS_00260
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Entry
CWS_00260 CDS
T02354
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bajc
Buchnera aphidicola JF99 (Acyrthosiphon pisum)
Pathway
bajc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bajc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CWS_00260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bajc03021
]
CWS_00260
Transcription machinery [BR:
bajc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CWS_00260
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_SUN2
CAP_N
Lectin_L-type_dom
Motif
Other DBs
NCBI-ProteinID:
ADP67032
LinkDB
All DBs
Position
complement(58937..60775)
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AA seq
612 aa
AA seq
DB search
MDQNPQSQLKLLVTHGKEQGYLTYSEVNDHLPEDIIDSEQIDDIIQMINDMGIPVVEEAP
DADDLILNEINTDTDEDAVEAATQVLSSVESELGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEEGINQVQCSVSEYPEAITYLLEQYDRVKTGQIRLSDIITGFVDPNAEQIFPPTA
IHIGSELLDEQQNNEEDEENNQEDHEDDHSIDPELANEKFSELRIQYNNTNNTIKNKNRT
HKDSLLEIYNLSEVFKQFRLVPKQFDHLVNNMRHMMERVRKQERIIIKLCVEICKMPKKN
FIKIFPIKKINYLWFIREQNTNQPWSENLKKVKEDVFISVKKLIKIEEETGLTIEQVKDI
NKRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEIGREPTPE
ELSEKMLIPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaacccacagtcgcaacttaagctacttgtcacacatggtaaggagcaaggg
tatttaacctattctgaagtgaatgatcatctaccagaagacattattgattctgaacaa
atcgatgatattattcagatgattaatgacatgggcattccagtagttgaagaagcacct
gatgctgacgatctaatattaaatgaaatcaatacagatacagatgaagatgcagttgaa
gcagcaactcaggtactatctagtgtagaatctgaattaggacgaactactgatcctgta
cgcatgtatatgagagaaatgggtactgttgaattactcacacgagaaggagaaattgat
attgctaaacgtattgaagaaggcattaatcaggttcaatgctcagtatcagagtatcca
gaagccattacatatcttcttgaacaatatgatcgtgttaaaactggacaaatacgatta
tcagatataataacaggttttgtagatcccaatgcagaacaaattttcccccctacagct
attcatataggttctgaacttcttgatgaacaacaaaataatgaagaagacgaagaaaac
aatcaagaagatcatgaagatgatcatagtattgatccagaattagctaatgaaaaattt
tctgaattacgtatacaatataataatacaaataatacaattaaaaataaaaatcgaaca
cataaagattcattattagaaatttacaatctttcagaagtttttaaacaatttcgacta
gttccaaaacaatttgatcatttagttaataatatgagacatatgatggaaagagtacga
aaacaagaaagaattattataaaattatgtgttgaaatatgtaaaatgccaaaaaaaaat
tttattaaaatttttccaataaaaaaaattaactatctttggtttataagagaacaaaat
acaaatcaaccatggtctgaaaacttaaaaaaagttaaagaagatgtgtttattagtgtg
aaaaaattaattaaaatagaagaagaaactggcttaacaattgaacaagtaaaagatatt
aataaaagaatgtctattggagaagcaaaagctagacgagcgaaaaaagaaatggtcgaa
gctaatttacgattagttatttctatcgcaaaaaaatatacgaatagaggactacagttt
ttagacttaattcaagaaggaaatattggtttaatgaaagctgtagataaatttgaatac
cgtcgtggttataagttttcaacttatgctacttggtggattcgacaagctattactcga
tctattgctgatcaagctcgtacaattcgtattccagtacatatgattgaaactattaat
aaactcaatcgtatttctagacaaatgttacaagaaataggtcgagaaccgactccagaa
gaactttctgaaaaaatgcttattcctgaagataaaattagaaaagtattgaaaatagcc
aaagaaccgatctcaatggaaacacctattggagatgatgatgattcacatttaggtgat
tttattgaagatactactttggaattaccattagactctgctacctctgaaagtttacgt
tctgcaacacatgatgttctatcaggtttaacagctcgtgaagcaaaagtactccgtatg
cgctttggaatagatatgaatactgatcacactttagaagaagttggaaaacaatttgat
gttactcgagagagaattcgtcaaatagaagcaaaagcacttagaaaactacgtcatccc
agcagatcagaagttttgcgcagttttttagacgattaa
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