Buchnera aphidicola JF99 (Acyrthosiphon pisum): CWS_03060
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Entry
CWS_03060 CDS
T02354
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bajc
Buchnera aphidicola JF99 (Acyrthosiphon pisum)
Pathway
bajc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bajc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWS_03060 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bajc03021
]
CWS_03060 (rho)
03019 Messenger RNA biogenesis [BR:
bajc03019
]
CWS_03060 (rho)
Transcription machinery [BR:
bajc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CWS_03060 (rho)
Messenger RNA biogenesis [BR:
bajc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CWS_03060 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_25
AAA_22
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
ADP67560
LinkDB
All DBs
Position
complement(627251..628510)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTALKNMPVSELITLGEKMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTILLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELPLSRKIAEKRVFPAIDY
NRSGTRKEELLTLPDELQKMWILRKIIHPMSEIDAMEFLLNKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgcacttaaaaatatgccagtttctgaattaattactcttggtgaaaaa
atggggttggaaaatttagcgcgtatgcgtaaacaagatattatttttgccatccttaaa
caacatgcaaaaagtggagaagatatatttggagacggtgttttagaaatactacaagat
ggatttggctttctacgttctgcagatagctcttatttagctggtcctgatgatatttat
gtttcaccgagtcagattcgtagatttaatctacgtacaggtgatactattgctggaaaa
ataagaccccctaaagaaggcgaaagatattttgctctacttaaagtaaacgaagtaaat
tatgataaacctgaaaatgcaagaagcaaaatattatttgaaaatttaacaccattacat
gccaattctagactacgaatggaacgtggaaacggatcaaccgaagatttaaccgcaaga
gtattagatttagcatcaccaatcggacgtggacaaagaggattaattgtagctccgcca
aaggcaggaaaaacaatattactgcaaaatatagcacaaagtattgcttataatcatcca
gattgcgttttaatggtattattgattgatgaaagaccagaagaagttactgaaatgcaa
agattagttaaaggagaagtggttgcctctacttttgacgaacctgcatcaagacatgtt
caagtggctgaaatggttattgaaaaagcaaaaagattagtagaacataaaaaagatgta
ataattttacttgattctattactcgtttagcaagagcctataatacagtagtacctgca
tcaggaaaagtattaactggaggagtagatgcaaatgctttacatagacccaagcgattt
tttggtgctgcgcgtaatgtagaagaaggaggaagtttgacaatcattgcaactgcatta
gttgatactggttctaaaatggatgaggtaatatacgaagagtttaaaggaacaggcaat
atggagcttccattatctaggaaaattgcagaaaagcgtgtttttccagctattgattat
aatcgatctggtactagaaaagaagaattattaactttgccagatgaactacaaaaaatg
tggattttaagaaaaattattcatcctatgagtgaaatagatgcaatggaatttttgctt
aataaacttgcaatgaccaaaacaaatgatgaattttttgatatgatgaaacgctcttaa
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