Buchnera aphidicola Ak (Acyrthosiphon kondoi): BAKON_055
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Entry
BAKON_055 CDS
T01825
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bak
Buchnera aphidicola Ak (Acyrthosiphon kondoi)
Pathway
bak02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bak00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BAKON_055 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bak03021
]
BAKON_055 (rpoD)
Transcription machinery [BR:
bak03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BAKON_055 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_SUN2
CAP_N
Lectin_L-type_dom
Motif
Other DBs
NCBI-ProteinID:
AEO08423
UniProt:
G2LMD5
LinkDB
All DBs
Position
complement(58867..60705)
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AA seq
612 aa
AA seq
DB search
MDQNPQSQLKLLITHGKEQGYLTYSEVNDHLPEDIIDSEQIDDIIQMINDMGIPVVEEAP
DADDLILNEINTDTDEDAVEAATQVLSSVESELGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEEGINQVQCSVSEYPEAITYLLEQYDRVKTGQMRLSDIITGFVDPNAEEIFSPSA
IHIGSELLDEEQSNDEDEEDNQEDHEDDHSIDPELANEKFAELRVQYNNTNNTIKNKNRT
HKDSLLEIYNLSEVFKQFRLVPKQFDHLVNNMRDMMERVRTEERIIIKLCVEICKMPKKN
FIKVFPVKKINNFWFIKEQNTNQPWSENLKKVKEDVFISIKKLIKIEEETGLTIEQVKDI
NKRMSIGESKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEIGREPTPE
ELSEKMLIPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaacccacagtcgcaacttaagctacttataacacatggtaaggagcaaggg
tatttaacctattctgaagttaacgatcatctaccagaagatattattgattctgaacaa
atcgatgatatcattcagatgattaatgatatgggcattccagtggttgaagaagcacct
gatgctgatgatctaatattgaatgaaataaacacagatacagatgaagatgcagttgaa
gcagcaacacaagttctatctagtgtagaatccgaattaggaagaactaccgatcccgtt
cggatgtatatgagagaaatgggcactgttgaattgcttacacgagaaggagaaattgat
atagctaaacgtattgaagaaggtataaatcaagtccaatgctctgtttcagaatatcca
gaagccattacatatcttcttgaacaatatgatcgtgttaaaactggtcagatgcgatta
tctgatataataacaggttttgtagatccaaatgcagaagaaattttttctcctagtgct
attcatataggttctgaacttttagatgaagaacaaagtaacgatgaagatgaagaagac
aatcaagaagatcatgaagatgatcacagtatagatccagaattagcgaatgagaaattt
gctgagttacgcgttcaatataataacacaaataatacaattaaaaataaaaacagaaca
cataaagactcattattagaaatttacaatctttcagaagtatttaaacagttccgatta
gttccaaaacaatttgatcatttagttaataatatgcgagatatgatggaaagggttcgt
acagaagaaagaattattataaaattatgcgtcgaaatttgtaaaatgcctaaaaaaaat
tttattaaagtttttccagtaaaaaagattaataatttttggtttataaaagaacaaaac
acaaatcaaccatggtctgaaaacttaaaaaaagtcaaagaagatgtttttattagtata
aaaaaattaattaaaatagaagaagaaactggtttgacaattgaacaagtaaaagatatc
aataaaagaatgtctattggagaatcaaaagctagacgagcaaaaaaagaaatggtagaa
gctaatttaagattagttatttctattgccaaaaaatatacaaatagaggactacaattc
ttagatttaattcaagaaggaaatattggtctaatgaaagctgtagataaatttgaatat
cgtcgtggttataagttttcaacttatgctacttggtggattcgacaagcaattacgcgt
tctattgccgatcaagctcgtactattcgtattccagtacacatgattgaaacaattaat
aaactcaatcgtatttccagacaaatgttacaagaaataggtcgagaaccaactccagaa
gaattatctgaaaaaatgctaattcctgaagataaaattagaaaagtattaaaaatagct
aaagaaccgatatcaatggaaactcctattggagatgatgatgattcacatttaggtgat
tttattgaggatactaccttagaattaccattagattctgctacttctgaaagtttacgt
tcagcaacacatgatgtcttgtcaggtctaacagctcgtgaggcaaaagtactgcgtatg
cgttttgggatagatatgaatactgatcatactctagaagaagttggaaaacaatttgat
gttactcgagaaagaatacgtcaaatagaagcaaaagcactaagaaaactacgtcatcca
agtagatcagaagtattgcgtagttttttagacgattaa
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