Buchnera aphidicola Ak (Acyrthosiphon kondoi): BAKON_296
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Entry
BAKON_296 CDS
T01825
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bak
Buchnera aphidicola Ak (Acyrthosiphon kondoi)
Pathway
bak03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BAKON_296 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bak03400
]
BAKON_296 (mfd)
Enzymes [BR:
bak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BAKON_296 (mfd)
DNA repair and recombination proteins [BR:
bak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BAKON_296 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEO08646
UniProt:
G2LN08
LinkDB
All DBs
Position
complement(323395..325833)
Genome browser
AA seq
812 aa
AA seq
DB search
MKIIEKKIVKNKRIINLEHERLLNLFYNVNNPKIMNKLSSYLHSFSGKIIFSLKKEESLR
KILKFLIKNKIYPQLIKNILDVNAKFDYFYIVEELENSFLDKKNNLLFICTKDLLPILVD
NKSISNTKKKPDINKYCSLSQLVLNHPIMHIEHGVGRYKGLTTIETASTQSEYLIILYAA
GDKLYVPVSYLHLVSPYTSKSLENAPLHKLGSQDWNKEKNKISKTVYDHAAQLLHIYAKR
KSRKGFAFKKDKEKYDCFCKDCSFKTTSDQDEVMKFVIRDMSKSIPMDRLICGDVGFGKT
EIAMRASFLSVSNKKQVAILVPTTLLAQQHYKNFKIRFSNWPVIIKILSRFQTQKEQDLI
FQNTKNGQIDIIIGTHKLLFKKIEWYDIGLLIIDEEHRFGVSHKEIIKKKYSNVDILTLT
ATPIPRTLNMAMTGIKDLSIIAKPPAQRLAIKTFIQEYNPLLIRKTILREISRGGQIYYI
YNRVQNIIHIAERLSMLIPEASIKIGHGQMKNVDLKKVMNEFYKNKFNVLVCTTIIESGV
DIPKANTIIIENSDRFGLSQLHQLRGRIGRSHHQAYALFLINNFKKITPDAKKRLEAISS
VDNFGGGFSLSNHDLEIRGVGEILGTEQSGHIKNIGLSLYMELLQNAVDLLKSGKMLSTN
KLLKTSTEVELYVSSLLPDDYIIDINTRLFFYKKISNAKNEKEIEKIKYELIDQFGKLPI
FSKNLILISKIRLIAQKIGIKYIKSNKNTGFIEFNDNNSVNIEYLLKIFKEEPKIWQMKS
PIKIKFVLNFKNDHARLKWIINLLRNLHKNSF
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattatagaaaaaaaaattgtaaaaaataaaagaattattaatttggaacacgaa
agattattaaatctattttataatgttaataatccaaaaataatgaataagctatcgtct
tatttacattcattttcaggaaaaataatattttctttaaaaaaagaagaatctttaaga
aaaattttgaaatttttgataaaaaataaaatttacccacaactcataaaaaacattctt
gatgttaatgcaaaatttgattatttctacatagtagaagaattagaaaatagtttttta
gataaaaaaaataatcttttatttatttgtacaaaagatttattaccaatattagttgac
aataaatctatttccaatacaaaaaaaaaacctgatattaataaatattgtagtttatct
caattagttttaaatcatccaattatgcatattgaacacggtgtaggaagatataaagga
ttaactactatagaaaccgctagtacacaatctgaatatttaattattttgtatgcagca
ggagacaaattatatgtaccagtttcctatttacatcttgtttcaccctatacttcaaaa
tcactagaaaatgctcctcttcataaattaggtagtcaggattggaataaagaaaaaaat
aaaattagtaaaactgtttatgatcatgctgcacaattattgcatatttacgctaaaaga
aaatcaagaaaaggttttgcatttaaaaaagataaagaaaaatacgattgcttttgcaag
gattgttcttttaagacaacatcagatcaagatgaagtaatgaaatttgtaataagagat
atgtctaaatcaattcctatggatcgtttaatttgtggtgatgtaggttttggaaagaca
gaaattgcaatgcgagcatcttttttatccgtatctaataagaaacaagtagctatttta
gtaccaactacattattagcgcaacaacattataaaaattttaaaatacgtttttctaat
tggcctgttattattaaaatattatctagatttcaaacacaaaaagaacaagatctaatt
tttcaaaatactaaaaacggacagattgatattataatcggtactcataaattattattt
aaaaaaatagaatggtatgatattggattattaattattgatgaagaacatagatttggt
gtaagtcataaagagattattaaaaaaaaatattctaacgtagatatactcactttgaca
gctacacctataccgcgtactttaaatatggcaatgactggtataaaagatttatctatt
atagcaaaacctccagctcaaagattagcaattaaaactttcattcaagaatacaaccct
ttactaataagaaaaacgatattacgcgaaatatcaagaggtggtcaaatttattatata
tataatcgagttcaaaatatcatacatattgctgagagattgtcaatgttgattcctgaa
gccagtattaaaataggtcatggacaaatgaagaatgttgatttgaaaaaagtaatgaat
gaattttacaaaaataaatttaatgtcttggtttgcactacaattattgaaagtggtgtt
gacataccaaaagccaatacaattattattgaaaattctgatcgttttggattatctcaa
cttcatcaacttcgtggtcgtattggtagatcccatcatcaagcatatgctttatttctt
attaataattttaaaaaaattactccggatgcaaaaaaaagattagaagctatttcatcg
gtcgacaattttgggggcggtttttctctgtctaatcacgatcttgaaattagaggagta
ggtgagatattaggtacagaacaaagtggacatatcaaaaatataggtctatctttatat
atggaattattacaaaacgctgttgatttattaaaaagtggaaaaatgttatctactaat
aaattattaaaaacatcaacagaagttgaattatacgtctcatctttattgcctgatgac
tatataatagatattaatacaagactatttttttataagaagatttctaatgctaaaaac
gagaaagaaatagaaaaaataaaatatgaactgattgatcaatttggaaaattacctatt
ttttctaaaaatttaattttaatttctaaaattcgattgatagcacaaaaaattggtatt
aaatatatcaaatctaataaaaatacaggttttatagagttcaatgataataattctgta
aatattgaatatctactaaaaatttttaaagaagaaccaaaaatttggcaaatgaaaagc
ccaataaaaataaaatttgttttaaattttaaaaatgatcatgcacgtcttaaatggatt
ataaatttattaagaaatttacataaaaatagtttttaa
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