Baekduia alba: DSM104299_01098
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Entry
DSM104299_01098 CDS
T09120
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bala
Baekduia alba
Pathway
bala03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bala00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DSM104299_01098 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bala03400
]
DSM104299_01098 (mfd)
Enzymes [BR:
bala01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DSM104299_01098 (mfd)
DNA repair and recombination proteins [BR:
bala03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DSM104299_01098 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
Cas3-like_C_2
AAA_30
AAA_22
RecG_dom3_C
AAA_19
UB2H
Motif
Other DBs
NCBI-ProteinID:
WCB92404
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All DBs
Position
1100134..1103526
Genome browser
AA seq
1130 aa
AA seq
DB search
MSLRPLLTHFADDPNAPRFAHEGGRAFVSASYRPFVIGALLDGLDGPMAGKPALVVAADD
RQARDLAADLRHWLAPRPVRYYPSRGVAYESHLAPPPHLVGLRVAALDALLDFERAGEDT
DAEPPVVVVSAVALSEKVPDPSLRPKSFWLRVGDLMDLDEVSADLVAAGYERVDQVDDRG
QFAIRGGILDVFPATADHAVRVDLFDIEIETLREFSTFTQRSLQELAELEIAPAAELAVE
HREAAEIAAVSDVEDRPDVAELLPVDQFHAFLDLAPAGAAIVLAEEAEIGNVLADHWQDV
CAAFHATDAHDLYVKPEDVQGALDARAHARLSALAGDQPFEFRAQAAELAARSLREAEPQ
LEKQVRSGYRTVVTWPQRGAGERTAYNLARLKAHWLEGDGTETAEPGDLRFAVASLRDGF
IAGGSRIAVIPEHRLFRRKRAERDDAQAAGRARRRGALRSFSDLRTGEHVVHEDHGVARF
AGFETKTVANVTRDYLQLEFAGSDKVYMPVEQLAKISRYLGAGSGAPTLSKLGGKAWETM
KARARRAAQELAGELLNLYAERRKRAGHSYPEDSEWLREFEEKFPYTETADQREAIEVVK
ADMERSTPMDRLICGDVGYGKTEVALRAAFKAADDGKQVLVLAPTTILAQQHFGNFAERL
KDYPFTVDHVSRFRTPKDQKEVVKAFNEGRVDILIGTHRLLGRDMRGKDIGLIIVDEEQR
FGVKQKELLRQLKLKVDVIAMSATPIPRTLQMSMAGIRDISVIETPPEGRRPVKTYVGEY
DEELVKGAIMREKARKGQAFFVHNRVDSIDETAERLRGLCPGVTFEVAHGQLDEKELEKR
MMSFLRGEADVLVATSIIESGIDIPQANTLIVERSDMFGLAQLYQIRGRVGRSRERAYAY
LLYPAHAALTEEAMKRMSALSDYTELGAGFKIAMRDLEIRGAGNLLGDEQSGHVAALGFE
LYMQMLDEAVAEAAEGGDEEDLREPVRLDVNVDAYIPADYIAYEQAKIDVHRRIAGAREV
ADLAVLRDELEDRFGEIPVPLLNLLALQQARIKLGQAGARAVSFRGDRLAVTPVDLDAER
AKRLKEALPQSTYEPGRSQLSVTVPKAPEERFPAVVAAADALLAVSTEAA
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcttcgccccctcctcacgcacttcgccgacgaccccaacgccccgcgcttcgcg
cacgagggcgggcgcgcgttcgtctcggcctcctaccgcccgttcgtcatcggcgcgctg
ctcgacggcctcgacgggccgatggccggcaagcccgcgctggtcgtcgccgccgacgac
cgccaggcgcgcgacctcgcggccgacctgcgccattggctcgccccgcgccctgtgcgc
tactacccgagccgcggcgtcgcgtacgagtcgcacctcgcgccgccgccgcacctcgtc
ggcctgcgcgtcgccgcgctcgacgcgctgttggacttcgagcgcgccggcgaggacacg
gacgccgagccgccggtcgtcgtcgtctccgccgtcgcgctgagcgagaaggtccccgat
ccctcgctgcgcccgaagtcgttctggctgcgcgtcggcgacctgatggacctcgacgag
gtctccgccgatctcgtcgccgccggttacgagcgcgtcgaccaggtcgacgaccgcggc
caattcgcgatccgcggcggcatcctcgacgtcttcccggccaccgccgaccacgcggtc
cgcgtcgacctcttcgacatcgagatcgagacgctgcgcgagttctcgacgttcacgcag
cgctcgctgcaggagctggccgagctggagatcgcgcccgccgccgagctggcggtcgag
caccgcgaagcggccgagatcgccgcggtcagcgacgtcgaggaccgccccgacgtggcc
gagctgctgcccgtcgaccagttccacgcgttcctggacctcgcgccggccggcgccgcc
atcgtcctggccgaggaggccgagatcggcaacgtgctcgccgaccactggcaggacgtc
tgcgcggccttccacgcgaccgacgcccacgacctttacgtcaagcccgaggacgtccag
ggcgcgctcgacgcgcgcgcccacgcgcggctgagcgccctggccggcgaccagccgttc
gagttccgcgcccaggccgccgagctcgccgcgcggtcgctgcgcgaagccgagccgcag
ctggagaagcaggtccgctccggctaccgcacggtcgtcacgtggccgcagcgcggcgcc
ggcgagcgcacggcctacaacctggcccgcctcaaggcccactggctcgagggcgacggc
acggagaccgcggagccgggcgacctgcgcttcgcggtcgcgtcgctgcgcgacggcttc
atcgccggcggctcgcgcatcgccgtcatcccggagcaccgcctcttccgccgcaagcgc
gccgagcgcgacgacgcgcaggccgccggccgcgcccgccgccgcggcgcgctgcgctcg
ttctcggacctgcgcaccggcgagcacgtcgtccacgaggaccacggtgtcgcgcgcttc
gcgggcttcgagaccaagacggtggccaacgtcacccgcgactacctccagctcgagttc
gccggcagcgacaaggtctacatgccggtcgagcagctcgcgaagatctcccggtacttg
ggagccggctcgggcgcccccacgctgagcaagctcggcggcaaggcgtgggagacgatg
aaggcccgcgcccgccgcgcggcgcaggagctcgccggcgagctgctcaacctctacgcc
gagcgccgcaagcgcgccgggcactcctatcccgaggactccgagtggctgcgcgagttc
gaggagaagttcccctacaccgagaccgccgaccagcgcgaggcgatcgaggtcgtcaag
gccgacatggagcgctcgacgccgatggaccgcctgatctgcggcgacgtcggctacggc
aagaccgaggtcgcgctgcgcgccgcgttcaaggcggccgacgacggcaagcaggtcctg
gtcctcgcgccgacgacgatcctcgcccagcagcacttcggcaacttcgccgagcggctg
aaggactaccccttcaccgtcgaccacgtctcccgcttccggacgcccaaggaccagaag
gaggtcgtcaaggccttcaacgaggggcgcgtcgacatcctcatcggcacccaccgcctg
ctcggccgcgacatgcggggcaaggacatcgggttgatcatcgtcgacgaggagcagcgc
ttcggcgtcaagcagaaggagctgctgcgccagctcaagctcaaggtcgacgtcatcgcg
atgagcgcgacgccgatcccgcgcacgctgcagatgtcgatggcgggcatccgcgacatc
tcggtcatcgagacgccgccggagggccgccggccggtcaagacctacgtcggggagtac
gacgaggagctcgtcaagggcgcgatcatgcgcgagaaggcccgcaagggccaggcgttc
ttcgtgcacaaccgcgtggactcgatcgacgagaccgccgagcgcctgcgcggcctctgc
ccgggcgtgaccttcgaggtggcccacggccagctcgacgagaaggagctcgagaagcgc
atgatgtcgttcctgcgcggcgaggccgacgtcctggtggcgacgtcgatcatcgagtcg
ggcatcgacatcccccaggcgaacacgttgatcgtggagcgctccgacatgttcggactc
gctcagctctaccagatccgcgggcgcgtcggccggtcccgcgagcgcgcctacgcctac
ctcctgtacccggcgcacgccgcgctgaccgaggaggcgatgaagcgcatgagcgcgctg
agcgactacaccgagctcggcgcgggcttcaagatcgcgatgcgcgacctggagatccgc
ggcgccggcaacctgctcggcgacgagcagtccgggcacgtggcggcgctcggcttcgag
ctgtacatgcagatgctcgacgaggcggtggccgaggcggccgagggcggcgacgaggag
gatctgcgcgagccggtccgcctcgacgtcaacgtcgacgcttacatcccggccgactac
atcgcctacgagcaggccaagatcgacgtccatcgccgcatcgcgggcgcgcgcgaggtc
gccgacctggccgtgctgcgcgacgagctcgaggaccgcttcggcgagatcccggtgccg
ctgctgaacctgctcgcgctccagcaggcgcgcatcaagctcggccaggcgggcgcgcgg
gcggtctcgttccggggcgatcgcctcgccgtgacgccggtcgacctcgacgccgagcgg
gccaagcggttgaaggaggcgctgccgcagtccacctacgaacctggtcgctcgcagctc
tcggtcacggttcccaaggcacccgaagagcgcttcccagcggtcgtcgcggcggcggac
gcgctgctcgccgtgtccacggaagccgcttag
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