Baekduia alba: DSM104299_02821
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Entry
DSM104299_02821 CDS
T09120
Name
(GenBank) DNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bala
Baekduia alba
Brite
KEGG Orthology (KO) [BR:
bala00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bala03019
]
DSM104299_02821
Enzymes [BR:
bala01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DSM104299_02821
Messenger RNA biogenesis [BR:
bala03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DSM104299_02821
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
nSTAND3
nSTAND_NTPase5
Rossmann-like
NACHT
ResIII
T2SSE
PhoH
ABC_tran
TsaE
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
WCB94093
LinkDB
All DBs
Position
complement(2810586..2814467)
Genome browser
AA seq
1293 aa
AA seq
DB search
MPIAELRTRLEELTLLDEHRLARRLDRARRHPEDEAGLARLDRDFAAAEARIERRRAAVP
AITYPEALPVSARREELLATIRDHQVVVVAGETGSGKTTQIPKICLELGRGIRGAIAHTQ
PRRLAARTVAQRIAEELDVGLGDAVGYAVRFNDRSSESTLVRLMTDGLLLAEIQRDRLLR
RYDTIIIDEAHERSLNIDFLLGFLHQLLPRRPDLKLIITSATIDPGQFAAHFGDAPIVEV
SGRTFPVETRYRPLALTEGGPERDQPEAIGDAVDELLRESRDGDVLVFLSGEREIRDTAD
ALRGRFKDDDLDILPLYARLSNAEQQKVFQGHRKRRVVLATNVAETSLTVPGIKYVVDPG
FARMSRYSARLKVQRLPIEPISQASADQRKGRCGRTSDGICVRLFDEEDFTERPRFTDPE
ILRTNLASVILQMAALDLGAVSEFPFLDPPDARQVRDGVNLLHELGALDPAAPSGKRLTG
VGRKLARLPVDPRMARMILEADRLRCVEEVIVIAAALSIQDPRERPSDLQAQADQQHARF
KDDHSDFVAYLNLWSYVREQQHELSGSQFRKRLKSEYLHFLRVREWQDLVGQLRSAAKEL
GITRNQEPGEVQHIHVALLSGLLSHVGVRDVAKRDYLGARGARFSIFPGSTLARKQPAWV
MVAELVETARLFGRAAAKIEPAWVEPLAEHLVKRTYSEPRWERKQGAVVATERVTLYGLP
IVAGRKVGYAKIDPELARDLFIRRALVERDWDTRHRFFADNARVLEEIDVLEQRERRRDI
VVDDQTLYDFFAARIPQDVVSAAHFDRWWKDARRADPSLLTYTLELLVRPEARDALEGAG
RPSAWRQGDLVLPLTYAFEPGSEHDGVTVHVPLATLPQLRATGFEWLVPAFRMELVTTLL
RGLPKELRRPLVPVPETAALALSRMKPRSGPLAEVLAREVSALKGTLVPAQAFAPSALPD
HLKMTFAVEDERGATVAHGTDLAAVRDQVKPRLRAALSAATAEHEHAGLTAWAGFDALPR
EIALRGAGDAGRAFGALVDRGDHVDVKMMESRAAADAAMALGTRRLLLLTIPTVARQVVG
RLDNRAQLLLAAAPHGSLAAVVDDATSAAVDVLVDEAGGPAWDAASFARLRGHVAGALAA
RTSVVMRDVVDILAARADLHRRMETLIAAPLRDARQDVAEQLGGLVYPGFAATTGAYRLG
DVVRYLRAAERRLERLADVVAVDRDRMAGVRALEGELRDRINAYVNAGRPVPSGLIEAGW
LIQELRVAQFAQALGVRGQVSAKRVRKAMDEAA
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
gtgccgatcgccgagctcagaacccgcctggaggagctgacgctgctcgacgagcatcgc
ctcgcacggcggctcgatcgtgcgcgccgccatccggaggacgaggcggggctggcacgg
ctggaccgcgacttcgccgcggccgaggcgcggatcgagcgccgccgcgccgccgtcccg
gccatcacctaccccgaggcgctgccggtctcggcgcgccgcgaggagctgctggcgacg
atccgcgaccaccaggtcgtcgtcgtcgccggcgagaccggctcgggcaagaccacgcag
atccccaagatctgcctggagctcggccgcgggatccgcggcgcgatcgcccacacccag
ccgcgccggctcgcggcccggacggtcgcgcagcgcatcgccgaggagctcgacgtcggg
ctcggcgacgccgtcggctacgccgtgcggttcaacgacaggtcgagcgagagcacgttg
gtgcggttgatgaccgacggcctgctgctggccgagatccagcgcgaccgcctgctacgc
cgctacgacaccatcatcatcgacgaggcgcacgagcgctcgttgaacatcgacttcctg
ctcggcttcctgcaccagctgctgccgcgccggcccgacctgaagctcatcatcacgtcg
gcgacgatcgaccccgggcagttcgccgcgcacttcggcgacgcgccgatcgtggaggtc
agcggccgcacgttcccggtcgagacgcgctaccggccgctcgcgctgaccgagggcggc
ccggagcgcgaccagcccgaggcgatcggcgacgccgtcgacgagctgctgcgcgagtcg
cgcgacggcgacgtcctggtcttcctgagcggcgagcgcgagatccgcgacacggccgac
gcgctgcgcgggcgcttcaaggacgacgacctggacatcctgccgctctacgcgcggctg
tccaacgccgagcagcagaaggtcttccagggccatcgcaagcgccgcgtcgtcctggcc
accaacgtcgccgagacgtcgctgaccgtgcccgggatcaagtacgtcgtcgatccgggc
ttcgcgcgcatgtcgcgctacagcgcgcggctgaaggtccagcggctgccgatcgagccg
atctcgcaggcctcggccgaccagcgcaagggccgctgcggccgcacctcggacggcatc
tgcgtccgcctcttcgacgaggaggacttcacggagcgcccgcgcttcaccgatccggag
atcctgcgcacgaacctcgcgtcggtgatcctgcagatggccgcgctcgacctcggcgcg
gtcagcgagttcccgttcctcgacccgcccgacgcgcggcaggtgcgcgacggcgtcaac
ctcctgcacgagctcggcgcgctggacccggccgcgccgtcgggcaagcgcctgacgggc
gtcggccgcaagctcgcgcggctgccggtcgacccgcggatggcccggatgatcctggag
gccgaccggctgcggtgcgtcgaggaggtcatcgtgatcgccgccgcgttgtcgatccag
gacccgcgcgagcggccgagcgacctgcaggcacaggccgaccagcagcacgcgcggttc
aaggacgaccactcggacttcgtcgcctacctcaacctgtggtcctacgtgcgcgagcag
cagcacgagctgtcgggctcgcagttccgcaagcggctcaagagcgagtacctgcacttc
ctgcgcgtgcgcgagtggcaggacctcgtcgggcagctgcgctcggcggccaaggagctg
ggcatcacgcgcaaccaggagccgggcgaggtgcagcacatccacgtcgccctgctgtcg
ggactgctctcgcacgtcggcgtgcgggatgtggccaaacgggactacctgggcgcgcgc
ggcgcgcgcttctcgatcttccccggctcgacgctggcccgcaagcagccggcgtgggtc
atggtcgccgagctcgtcgagaccgcgcggctcttcggccgggccgcggccaagatcgag
ccggcgtgggtcgagccgctggccgagcacctggtcaagcgcacctactccgagccgcgc
tgggagcgcaagcagggcgcggtcgtcgccaccgagcgggtcacgttgtacgggttgccg
atcgtcgcgggccgcaaggtcggctacgcgaagatcgacccggagctcgcgcgcgacctg
ttcatccgccgcgcgctggtcgagcgcgactgggacacgcgccaccgcttcttcgccgac
aacgcccgggtgctcgaggagatcgacgtgctcgagcagcgcgagcgccgccgcgacatc
gtggtcgacgaccagacgctctacgacttcttcgccgcgcggatcccgcaggacgtcgtc
agcgcggcgcacttcgaccgctggtggaaggacgcgcgccgcgccgacccgtcgctgttg
acctacaccttggagctgctcgtccggcccgaggcgcgcgacgcgctggagggcgcgggc
cgcccgtcggcctggcgtcagggcgacctcgtcctgccgttgacctacgccttcgagccg
ggctccgagcacgacggcgtcaccgtgcacgtcccgctcgcgacgctgccgcagctgcgc
gcgacgggcttcgaatggctcgtccccgccttccgcatggagctggtgacgacgctgctg
cgcggcctgcccaaggagctgcgccgcccgctcgtgccggtcccggagaccgcggcgctg
gcgctgagccggatgaagccgcgctccgggccgctggccgaggtcctggcccgcgaggtc
agcgccctgaagggcaccctcgtcccggcgcaggcgttcgccccctccgccctgcccgac
cacctcaagatgacgttcgccgtcgaggacgagcgcggcgcgaccgtcgcgcacggcacc
gacctcgcggcggtccgcgaccaggtcaagccgcggctgcgggccgcgctgagcgccgcg
accgccgagcacgagcacgccgggctcaccgcgtgggcgggcttcgacgcgctgccgcgc
gagatcgccctgcgcggcgccggcgacgccggccgcgcgttcggcgcgctggtcgaccgc
ggcgaccacgtcgacgtcaagatgatggagtcgcgcgctgccgccgacgccgccatggcg
ctcggcacgcgccgcctgctcctgctgacgatcccgaccgtcgcccgccaggtcgtcggc
cggctcgacaaccgcgcgcagctgctgctggccgcggcgccgcacggctcgctggccgcg
gtcgtcgacgacgcgacgagcgcggcggtcgacgtcctggtcgacgaggccggcggcccg
gcgtgggacgccgcgtcgttcgctcggctgcgcggccacgtcgcgggcgcgctggcggcg
cggacgagcgtcgtgatgcgcgacgtcgtcgacatcctcgccgcgcgcgccgacctgcac
cgccgcatggagacgctgatcgccgcgccgctgcgcgacgcccgccaggacgtcgccgag
cagctcggcggcctcgtctacccgggcttcgccgcgacgaccggcgcctaccgcctcggc
gacgtcgtccgctacctgcgcgccgccgagcgccggctggagcgcctggccgacgtcgtc
gcggtcgaccgcgaccgcatggccggcgtgcgcgcgctggagggcgagctgcgcgaccgg
atcaacgcctacgtcaacgccgggcgtcccgtgccgtccgggctgatcgaggccgggtgg
ctgatccaggagctgcgcgtcgcgcagttcgcgcaggcgctcggcgtccgcggccaggtc
agcgccaagcgcgtccggaaggcgatggacgaggcagcatga
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