Baekduia alba: DSM104299_03281
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Entry
DSM104299_03281 CDS
T09120
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bala
Baekduia alba
Brite
KEGG Orthology (KO) [BR:
bala00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bala03016
]
DSM104299_03281 (rnd)
Enzymes [BR:
bala01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
DSM104299_03281 (rnd)
Transfer RNA biogenesis [BR:
bala03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DSM104299_03281 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
WCB94544
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All DBs
Position
3234586..3235743
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AA seq
385 aa
AA seq
DB search
MPRSTAEIAERARETGRLGIDTEFMGEGRYQPLLCLAQIALDDGEGGSEVIVLDPLTEEY
DPAPLADVLADPAIEIVLHAARQDVALLRRDWGQPLRNVFDTQVAAGFAGMRAQLGYEPL
LKEMLGVRLRKSASFTRWDDRPLTEEQLGYAREDVLHLLQLASALQGRLSDLGRLEWARE
ECRAFEEIDDRRDLDLVFGKLPRINSLDPSQRAVARELVEWREDAARGGDRPVSSVLHDA
ALIEIAKRRPQNVDRLRQIRGLNDATLHRRGKAIVEAVARGRDRESIPVEGVRPTQPDAE
DAPLIALGEALVRTRAMESELAYELIAARADLQKIVTAARNGDPEPQVRTLQGWRREVVG
VELLELLAGRRTLRVADGHRLEISE
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgccgcggtcgaccgcagagatcgccgagcgcgcacgggagaccgggcggctcggcatc
gacaccgagttcatgggcgaagggcgctaccagccgctgctgtgcctggcccagatcgcg
ctcgacgacggcgagggcggcagcgaggtcatcgtcctcgacccgctgaccgaggagtac
gaccccgcgccgctggccgacgtcctcgccgaccccgcgatcgagatcgtcctgcacgcc
gcccgccaggacgtcgcgctgctgcgccgcgactggggccagccgctgcgcaacgtcttc
gacacgcaggtcgccgccggcttcgccggcatgcgcgcccagctcggctacgagccgttg
ttgaaggagatgctcggcgtgcggctgcgcaagtccgcgtcgttcacgcgttgggacgac
cggccgctgaccgaggagcagctcggctacgcgcgcgaggacgtcctgcacctgctccag
ctcgcctccgcgctccagggccggctcagcgacctcggccgcctggagtgggcgcgcgag
gaatgccgcgcgttcgaggagatcgacgaccgccgcgacctcgacctcgtgttcggcaag
ctgccgcgcatcaactcgctggacccgtcgcagcgcgcggtcgcccgcgagctcgtcgag
tggcgcgaggacgcggcgcggggcggcgaccgcccggtctccagcgtcctgcacgacgcg
gcgctgatcgagatcgccaagcgccggccgcagaacgtcgaccgtctgcgccagatccgc
ggcctcaacgacgcgacgctgcaccggcgcggcaaggcgatcgtcgaggcggtcgcccgc
gggcgcgaccgcgagtcgatcccggtcgagggcgtccgccccacccagcccgacgccgag
gacgcaccgctgatcgcgctcggcgaggcgctcgtgcgcacgcgcgcgatggagtccgag
ctggcctacgagctgatcgccgcacgcgccgacctccagaagatcgtcaccgccgcgcgc
aacggcgacccggagccgcaggtgcgcacgctccagggctggcggcgcgaggtcgtcggc
gtcgagctgctcgagctgctcgcgggccggcggacgctgcgggtggccgacggccaccgc
ctcgagatcagcgagtag
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