Baekduia alba: DSM104299_04813
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Entry
DSM104299_04813 CDS
T09120
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bala
Baekduia alba
Pathway
bala03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bala00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSM104299_04813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bala03019
]
DSM104299_04813
03400 DNA repair and recombination proteins [BR:
bala03400
]
DSM104299_04813
Enzymes [BR:
bala01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DSM104299_04813
Messenger RNA biogenesis [BR:
bala03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSM104299_04813
DNA repair and recombination proteins [BR:
bala03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DSM104299_04813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Gag_p30
AAA_22
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
WCB96059
LinkDB
All DBs
Position
complement(4821396..4823465)
Genome browser
AA seq
689 aa
AA seq
DB search
MSTAIDTRAEQHLHALAGPDAAFREHQLDAVRDLVEDRARVLCVQRTGWGKSAVYFVATA
LLREAGAGPTLIVSPLLALMRNQIDAARKLDLRAHTINSTNRDAWTEVADLLERDAVDLL
LISPERLNNPQFRDTMLPVFAQRVGLLVVDEAHCISDWGHDFRPDYRRIGDMLERLPDGV
GVLCTTATANDRVVADVSEQLAAGRDAGELRTYRGALGRSSLRFEVVDLPSQADRLAWLA
QHLPELPGSGIVYTLTKRDAELVATFLTGRGIAAEAYSGEIDTDRRIGVEDRLLRNELKA
VVATSALGMGYDKPDLGFVVHYQAPGSVISYYQQVGRAGRGIDRAEVVLLRGAEDKRIQD
FFIEQAFPRREIVDRVLEHLDAVGGDGAGTQELMAQVNLGKTRIEGLLKVLDVEGAVARD
GSRWLARPGNAWTYDAERYGRITELRRREQTAMAAFGSDGRCLMRALQEELDDPDPQDCG
RCSVCAGTRFDGPLDDTVVRDAAIHLRSRPVLIEVKKMAPGDDGRMKKIPEAVRAEEGRA
LARLGDGGWDRLVQAGRAAGRFDDELVAAAAETIRTWGAPLGWVTAVPSLRSGPLVPDFA
ERLAAALRLPFAPALGRAEERPPQREMANAPQQVGNVRGAFAVTGGVSADPVLLVDDIRF
SGWTLAMLAGQLRQKGTGPVYPFALATAF
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgccatcgacacccgcgccgaacagcacctccacgcgctcgccggacctgac
gccgcgttccgcgagcatcagctcgacgccgtgcgcgacctcgtcgaggatcgcgcgcgc
gtcctctgcgtccagcgcaccggctgggggaagtccgcggtctacttcgtggcgaccgcg
ctgctgcgggaggccggcgcgggcccgacgctcatcgtctcgccgctgctcgcgctgatg
cgcaaccagatcgacgccgcgcgcaagctcgacctgcgcgcccacaccatcaactcgacc
aaccgcgatgcgtggaccgaggtcgccgatctcctggaacgcgacgccgtcgacctcctg
ctcatcagccccgagcgcctcaacaacccgcagttccgcgacaccatgctcccggtgttc
gcccagcgcgtcggcctgctcgtcgtcgacgaggcgcactgcatctccgattggggccac
gacttccggcccgattaccgccgcatcggcgacatgctcgagcgcctgcccgacggcgtc
ggcgtgctctgtaccaccgcgaccgcgaacgaccgcgtcgtcgccgacgtctccgagcag
ctggccgccggccgcgacgccggcgagctgcgcacctaccgcggcgcgctcggccgctcc
agcctgcgcttcgaggtcgtcgaccttccgtcgcaggccgaccgcctcgcgtggctcgcc
cagcacctgcccgagctgccgggctcgggcatcgtctacaccctgaccaagcgcgacgcg
gagctggtcgcgacgttcctgaccggccgcgggatcgcggccgaggcctacagcggcgag
atcgacaccgaccggcgcatcggcgtcgaggaccggctgctgcgcaacgagctcaaggcc
gtcgtcgcgacgagcgctctgggcatgggctacgacaagcccgacctcggcttcgtcgtc
cattaccaggcgcccggctcggtcatctcctactaccagcaggtgggccgcgccggccgc
ggcatcgaccgcgccgaggtcgtgctgctgcgcggcgccgaggacaagcgcatccaggac
ttcttcatcgagcaggccttcccgcgccgcgagatcgtggatcgcgtgctcgagcacctc
gacgcggtcggcggcgacggcgccggcacgcaggagctgatggcccaggtcaacctcggc
aagacgcggatcgagggcttgttgaaggtgttggacgtcgagggcgcggtcgcgcgcgac
ggctcgcgctggctcgcgcggccgggcaacgcctggacctacgacgccgagcgctacggc
cgcatcaccgagctgcgccgccgcgagcagaccgcgatggccgccttcggctccgacggc
cgctgcctcatgcgtgcgctgcaggaggagctcgacgatccggacccccaggactgcggg
cgctgctcggtgtgcgcaggcacgcgcttcgacggcccgctggacgacacggtcgtgcgc
gacgccgcgatccacctgcgctcgcggccggtgctgatcgaggtcaagaagatggcgccc
ggcgacgacggccggatgaagaagatccccgaggccgtccgcgccgaggagggccgcgcg
ctcgcgcgcctcggcgacggcggctgggaccggctcgtccaggccggccgcgccgccggc
cgcttcgacgacgagctcgtcgccgcggcggccgagacgatccggacctggggcgcgccg
ctgggctgggtgacggcggtgccgtcgctgcgctcgggccccctggtgccggacttcgcg
gagcgcctggccgccgcgctgcgcctcccgttcgcgccggcgctcggccgcgccgaggag
cgtccgccgcagcgcgagatggccaacgccccgcagcaggtcggcaacgtgcgcggcgcc
ttcgcggtgaccggcggcgtgagcgccgacccggtcctgctcgtcgacgacatccgcttc
agcggctggacgctggcgatgctggccggccagctgcgccagaagggcaccgggcccgtc
tacccgttcgcgctggcgacggcgttctag
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