Baekduia alba: DSM104299_04892
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Entry
DSM104299_04892 CDS
T09120
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bala
Baekduia alba
Pathway
bala03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bala00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DSM104299_04892 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bala03021
]
DSM104299_04892 (rpoC)
03400 DNA repair and recombination proteins [BR:
bala03400
]
DSM104299_04892 (rpoC)
Enzymes [BR:
bala01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DSM104299_04892 (rpoC)
Transcription machinery [BR:
bala03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DSM104299_04892 (rpoC)
DNA repair and recombination proteins [BR:
bala03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DSM104299_04892 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WCB96137
LinkDB
All DBs
Position
complement(4880693..4884967)
Genome browser
AA seq
1424 aa
AA seq
DB search
MIDINNFDAIEIGLASSKQIRGWSSGEVTKPETINYRTLKPEKDGLFCERIFGPTKDWEC
YCGKYKRVRYKGIVCERCGVEVTRSKVRRERMGHIDLAAPVSHIWFFKGVPSRIGYLLDM
APKELEKILYFAASIVTWVDQEARWRDLPKLEAEMQEELTRLRAEENERVEELRTSREAR
ITFLNTGEQGDFGDEDHLWAESLDINVKKLSDDEREKLIKEIQKTFASDIDDTQAYYEDA
RERLKDVWKLFANKDEPAEEAPQEGEDWPLNTYVDKAAEKDDFRPKTIIADETFFRELKH
RFGSPFGFGEYFGGGMGAEHIRTLLQEKDEYDRLAPPRETDADRLAGDDLAPQDQPGIAL
EHEREDLEDQVKNGKGQKQARAVKRLKVLSAFLHSDNKPEHMVLEAVPVIPPELRPMVQL
DGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDALFDNGRRGRP
VTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVSGPSLRLHQCGLPKLMALE
LFKPFIMAQLVERKAAQNIKAAKKMVDSMIPEVWDVLEQVIHEHPVLLNRAPTLHRLGIQ
AFEPVLVEGKAIQVHPLVCSAFNADFDGDQMAVHLPLSAEAQAEARILMLSSNNILSPAH
GAPLATPAQDMVLGTFYLTHGLDAGELSEKQAKLAAGEWPSTEPRPKVFRTAQEAELSYD
NKIVGLHDLAEYRQIGREGGHILTTVGRIIYNDKIERALEVALGEDFDPTSYDFVNQAMR
KKDTVKLIDALVQRHGASAVALVLDAFKDLGFHFATLAGITVSKNDVIIPPQKGEILKKY
EGEVAEIHDQYDMGLITQEERHELVVEKWTECTDTVADSMQENFDPLNPIFMMANSGARG
SISQIRQLAGMRGLMANPKGEIIERPIKANFMEGLTVLEYFISTHGARKGLADTALRTAD
SGYLTRRLVDVSQDVIIRELDCGTTEGIELPVFDAAGDPNTNLVGRIAPSDIKVGKEMIT
KKGEEIDRAELAKLAELYADEVEKGARPVVPVRSVLKCEATSGVCQACYARAMATGKLAQ
IGDAVGIVAAQSIGEPGTQLTMRTFHTGGVAGADITHGLPRVVELFEARKPKGLAQIAEQ
DGVVTVEETDKARTVVVTDDAGEEHRYTFPRRTRLLVEDKQRVAAGTQLNEGSLYPHDLL
KLRGRTETEQYLVKEVQEVYKSQGVDINDKHIELIVRQMLKKVRVDQKGDTNYLPGQFVD
RYDFARVNAEVAKAKGETAQYEEIILGITKASLNTDSFLSAASFQETTKVLTDAALEGKK
DTLNGLKENVIIGKLIPAATGLKRYRRIEIEPSEPLPRAMDEVGLLDQDEIAAELGLGDG
DGLGGFGAGFDQDLAQLEDIGAGGDTGFADELAELDVPSDNDES
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atgatcgacatcaacaacttcgacgccatcgagatcggactggcgtcctccaagcagatc
cgcgggtggtcctcgggcgaggtcaccaagccggagaccatcaactaccgcacgctcaag
ccggagaaggacggcctcttctgcgagcgcatcttcggtcccaccaaggactgggagtgc
tactgcggcaagtacaagcgcgtccgctacaagggcatcgtctgcgagcgctgcggcgtc
gaggtcacgcggtccaaggtgcgccgtgagcgcatgggccacatcgacctcgcggcaccg
gtcagccacatctggttcttcaagggcgtcccgagccgcatcggctacctgctcgacatg
gctcccaaggagctcgagaagatcctgtacttcgccgcgtcgatcgtgacgtgggtggac
caggaggcccgctggcgcgacctgcccaagctcgaggccgagatgcaggaggagctcacg
cgcctccgcgccgaggagaacgagcgggtcgaggagctgcgcacgagccgcgaggcgcgc
atcacgttcctcaacacgggcgagcagggcgacttcggcgacgaggaccacctctgggcc
gagtcgctcgacatcaacgtcaagaagctctccgacgacgagcgcgagaagctcatcaag
gagatccagaagaccttcgcgtcggacatcgacgatacgcaggcctactacgaggacgcc
cgcgagcgcctcaaggacgtctggaagctcttcgccaacaaggacgagccggccgaggaa
gcgccccaggagggcgaggactggccgctgaacacctacgtcgacaaggcggcggagaag
gacgacttccgccccaagacgatcatcgcggacgagacgttcttccgcgagctcaagcac
cgcttcggctccccgttcggcttcggcgagtacttcggcggcggcatgggcgccgagcac
atccgcacgctgctgcaggagaaggacgagtacgaccgcctcgcgccgccgcgtgagacc
gacgccgaccgcctggccggcgacgacctcgccccgcaggaccagccgggcatcgcgctc
gagcacgagcgcgaggacctggaggaccaggtcaagaacggcaagggccagaagcaggcc
cgcgcggtcaagcgcctgaaggtcctctcggccttcctgcactccgacaacaagcccgag
cacatggtgctcgaggccgttccggtcatcccgccggagctgcgcccgatggtgcagctg
gacggtggccgcttcgcgacctccgacctcaacgacctctaccgccgcgtcatcaaccgc
aacaaccggctcaagcgcctgctcgacctcggcgcgccggagatcatcgtcaacaacgag
aagcgcatgctgcaggaggccgtcgacgcgctgttcgacaacggccgccgcggccggccc
gtcacgggcccgggcaaccgcccgctcaagtcgctctccgacatgctcaagggcaagcag
ggccggttccgccagaacctgctcggcaagcgcgtggactactccggccgttcggtgatc
gtgtcgggcccgtccctgcgcctgcaccagtgcggcctgccgaagttgatggccttggag
ctcttcaagcccttcatcatggcccagctggtcgagcgcaaggccgcccagaacatcaag
gccgccaagaagatggtggactcgatgatcccggaggtctgggacgtcctcgagcaggtc
atccacgagcacccggtgctcctcaaccgcgcgcccacgctccatcgcctcggcatccag
gcgttcgagccggtgctggtcgagggcaaggccatccaggtccacccgctcgtctgctcc
gccttcaacgcggacttcgacggcgaccagatggcggtccacctcccgctcagcgccgag
gcgcaggcggaggcccgcatcctgatgttgtcctccaacaacatcctgagcccggcgcac
ggcgcgccgctggcgacgcccgcgcaggacatggtcctgggcaccttctacctcacgcac
ggcctcgacgccggcgagctgtcggagaagcaggcgaagctggccgccggcgagtggccg
agcaccgagccgcggccgaaggtgttccgcacggcgcaggaggccgagctctcctacgac
aacaagatcgtcggcctgcacgacctggcggagtaccgtcagatcggccgcgagggtggc
cacatcctcacgaccgtcggccggatcatctacaacgacaagatcgagcgcgcgctcgag
gtggcgctgggcgaggacttcgatccgacgtcctacgacttcgtcaaccaggcgatgcgc
aagaaggacaccgtcaagctgatcgacgcgctcgtgcagcgtcacggcgcgtcggcggtg
gcgctggtgctcgacgcgttcaaggacctcgggttccacttcgcgacgctcgccggcatc
acggtgtccaagaacgacgtcatcatcccgccgcagaagggcgagatcctcaagaagtac
gagggtgaggtcgcggagatccacgaccagtacgacatggggctcatcacgcaggaggag
cgccacgagctggtcgtcgagaagtggacggagtgcaccgacacggtcgccgactccatg
caggagaacttcgatcccctgaaccccatcttcatgatggccaactccggggcccgaggc
tcgatctcccagatccgccagctggccggcatgcgcggcctgatggccaacccgaagggc
gagatcatcgagcgcccgatcaaggccaacttcatggaaggcctgacggtcctcgagtac
ttcatctcgacccacggcgcccgcaagggcctcgcggacaccgccctgcgcaccgccgac
tccgggtacctgacccggcgcctggtggacgtctcgcaggacgtcatcatccgtgagctc
gactgcggcaccaccgagggcatcgagctcccggtgttcgacgccgccggcgatcccaac
accaacctggtgggccgcatcgcgccgtccgacatcaaggtcggcaaggagatgatcacc
aagaagggcgaggagatcgaccgcgccgagctggccaagctggccgagctctacgcggac
gaggtcgagaagggcgcccgcccggtcgtcccggtccgctccgtgctcaagtgcgaggcc
accagcggcgtgtgccaggcgtgctacgcccgggccatggccaccggcaagctcgcgcag
atcggtgacgcggtcggcatcgtcgccgcccagtcgatcggcgagccgggcacgcagctg
accatgcgcacgttccacaccggcggcgtcgccggcgcggacatcacgcacggcctcccg
cgtgtcgtggagctgttcgaggcgcgcaagcccaagggcctcgcgcagatcgccgagcag
gacggcgtcgtgacggtcgaggagaccgacaaggcccgcaccgtcgtcgtcaccgacgac
gccggcgaggagcaccgctacacgttcccgcggcgcacgcgcctgctggtcgaggacaag
cagcgggtcgccgccggtacgcagctcaacgagggctcgctgtacccgcacgacctgctc
aagctccgcggccggaccgagaccgagcagtacctggtcaaggaggtccaggaggtctac
aagtcccagggcgtggacatcaacgacaagcacatcgagctgatcgtccgccagatgctc
aagaaggtccgcgtcgaccagaagggcgacacgaactacctcccggggcagttcgtcgat
cgctacgacttcgcgcgggtcaacgccgaggtggcgaaggccaagggcgagacggctcag
tacgaggagatcatcctcggcatcacgaaggcgtccctgaacacggactccttcctctcg
gcggcctccttccaggagaccacgaaggtgctcaccgacgccgcgctcgagggcaagaag
gacactctcaacggcctcaaggagaacgtgatcatcggcaagctgatcccggccgcgacc
gggctgaagcgctaccgccgcatcgagatcgagccgtccgagccgctgccgcgcgcgatg
gacgaggtcggcctgctcgaccaggacgagatcgccgccgagctgggtctcggcgacggc
gacgggctcggcgggttcggcgccggcttcgaccaggacctcgcgcagctcgaggacatc
ggcgccggtggcgacaccgggttcgccgacgagctcgccgagctggacgtgccgtcggac
aacgacgagtcgtag
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integrated database retrieval system
