Brevundimonas albigilva: M8231_07935
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Entry
M8231_07935 CDS
T08389
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
balb
Brevundimonas albigilva
Pathway
balb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
balb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M8231_07935 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
balb03400
]
M8231_07935 (mfd)
Enzymes [BR:
balb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M8231_07935 (mfd)
DNA repair and recombination proteins [BR:
balb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M8231_07935 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
URI16877
LinkDB
All DBs
Position
complement(1592675..1596130)
Genome browser
AA seq
1151 aa
AA seq
DB search
MDAKVEHRADAELGGAPEGLDALIVAERLKAAGKAGVGLFVARDYQRASAFIQAFGFFSQ
DVEVLEYPNWDCLPYDRLSPTAAIGAQRMATLTRLAGRKAGDKPLLVVTTIAAAMQRTPP
RSVTTAAGFDARVGQDLDIAALEGYFAANGYVRASTVSERGEFAVRGGVIDVFPPGFEAP
VRLDMFGSELESIRAFDPETQRSTGQMKAVSLAPVSEVLLDKDAISRFRTGYLNLFGAPG
DDPLYATISEGARRQGMEQWLPLFYDQLDTLFDYLPDAAQLYFDNQVEAARAERWDLIAD
AHEARAEAAKTKGNAIANRALPPQKLYLDQGDWNQTLAGRDVRRFSPFASGRDDAGGRLG
RSFAAERSQDSVNLFGAVAKHAEALKAEGRRVLFASWTEGSSERLAAMLNDHGLEHVVAV
REWKDVQNAPKDVYLRGVLSVEHGFVTDDLAVISETDILGDRLARPRRKRRAANFLAEAS
ALTTGDLVVHVDHGIGRYEGLKTLDIQSAPHDCLELFYAGESKLYLPVENIDLLTRYGSD
SDGVQLDRLGGAGWQARKAKAKERLRAMAEGLIALAAKRALRETDAVTPPPGLFAEFCAR
FPYEETDDQLNAIGDVLEDLGKGVPMDRLICGDVGFGKTEVALRAAFVVALSGQQVAIVA
PTTLLARQHFKTFKERFAGWPVNVRQLSRMVPAKEASETRAGLKDGSIEIVVGTHAVLSE
QVGFKNLGLVIVDEEQHFGVKHKEKLKTLRADVHLLTLTATPIPRTLQMALTGIREMSII
ATPPVDRLAVRTYVTPRDPVLVREALLREKYRGGQAYYVAPRLKDLPDIERFLREQVPEV
KFVVGHGQMSATQLEEVMSAFYDGEYDVLVSTTIVESGLDIPTANTLVVHRADMFGLAQL
YQIRGRVGRSKARAFAYLTTDPVKPMTPSAERRLQVLQSLDNLGAGFQLASHDLDQRGGG
NLLGDEQSGHIREVGVELYQQMLEDAVAELKEKGEGGAVDRGWSPAINVGASVLIPEDYV
PDLNVRLSLYRRLSDAEQSEDREALAAELIDRFGPLPDEARQLLKIVGIKANCRRANIEK
IDIGPKGAVLTLRDNTFPNPAGLIGLIQKNHAFWKIRPDQKIVVSGEWPSAEDRLKVAER
ITADLARVAAA
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atggacgccaaggtcgaacaccgcgccgacgccgaactggggggcgcgcccgagggactg
gacgccctgatcgtcgccgaacggctgaaggcggccggcaaggccggcgtcggccttttc
gtggcgcgggattatcaacgcgcctcggccttcattcaggcgttcggttttttctcgcag
gacgttgaagtccttgaatatccgaactgggactgtcttccctacgaccgtctgagcccc
acggcggcgatcggggcgcagcgcatggcgaccctgacgcggctggcgggccgcaaggcc
ggcgacaagcccctgctggtcgtcacgaccatcgccgcggccatgcagcgcacgccgccg
agatcggtgacgacggctgcgggcttcgacgctcgggtcggccaggatctcgatatcgcg
gcgctggaaggttacttcgccgccaacggctatgtgcgggcgtcgaccgtgtccgaacgc
ggcgagttcgccgtgcgcggcggggtgatcgacgtcttcccgccggggttcgaggcgccg
gtgcggctggacatgttcggctcggaactggaatcgatccgcgccttcgatcccgagacc
cagcgatcgaccggccagatgaaggcggtgtccctggcgccggtgtccgaggtgctgctg
gacaaggacgccatctcgcgcttccgcaccggctatctgaacctgttcggcgcgccgggt
gacgatccgctgtacgccaccatcagcgagggcgcgcgacgccaggggatggagcagtgg
ctgccgctgttctacgaccagctggacacgctgttcgactatctgcccgatgcggcccag
ctgtatttcgacaatcaggtggaggccgcgcgggccgaacgctgggacctgatcgccgac
gcccacgaggcgcgcgccgaggcggccaagaccaagggcaatgcgatcgccaaccgcgcc
ctgccgccgcagaagctctatctggaccagggcgactggaaccagacgctggccgggcgc
gacgtgcgccgtttctcgccgttcgcaagcggccgagacgatgcgggcgggcggctgggg
cgaagcttcgccgccgagcggtcgcaggacagcgtcaatctgttcggggcggtggccaag
cacgccgaggcgctgaaggcggaaggtcgccgcgtgttgttcgccagctggaccgagggc
tcgtcagagcgcctggccgccatgctgaacgaccacggactggagcatgtcgtcgccgtc
cgcgaatggaaggacgtccagaacgcccccaaggacgtgtacctgcgcggcgtcctgtcg
gtcgagcacggcttcgtcaccgacgacctggcggtgatctccgagaccgacatcctgggc
gaccggctggcgcgcccgcgccggaaacgtcgcgcggcgaacttcctggcggaggcctcg
gccctgacgaccggcgacctggtcgtccacgtcgatcacggcatcgggcgatacgaggga
ttgaagaccctggacatccagtcggcgccgcacgactgtctggaactgttctatgcgggt
gagagcaagctctatcttcccgttgaaaacattgatctgttgacccgatacgggtcggat
tccgacggcgttcagctggaccggctgggcggcgcgggctggcaggcgcgcaaggccaag
gccaaggagcggctgcgcgccatggccgagggcctgatcgccctggccgccaagcgggcc
ctgcgcgaaaccgacgccgtcaccccgccgccgggtctgttcgccgagttctgcgcccgc
tttccctatgaggagaccgacgaccagctgaacgccatcggcgacgtgctggaggacctg
ggcaagggcgtgcccatggatcggctgatctgcggcgacgtcggcttcggcaagaccgag
gtggcgctgcgggccgccttcgtcgtggccctgtcgggccagcaggtggccatcgtcgcg
cccacgaccctgctggcgcgtcagcacttcaagaccttcaaggaacgtttcgccggctgg
ccggtcaatgtgcgccagctgtcgcgcatggttccggccaaggaagcctcagagacgcgc
gccggtctgaaggacggctccatagagatcgtggtcggcacacacgccgtcctgtccgaa
caggtcgggttcaagaacctgggcctggtgatcgtggacgaggagcagcacttcggcgtc
aagcacaaggagaagctgaagacgctgcgggccgacgtccatctgctgaccctgaccgcc
acgccgatcccgcgcaccctgcagatggccctgaccggcattcgcgagatgtcgatcatc
gccaccccgccggtcgatcgtctggcggtccgcacctatgtgacgccgcgggatccggtt
ctggtgcgcgaggccctgctgcgcgaaaagtatcgcgggggacaggcctattatgtcgcg
ccgcgcctgaaagacctgccggacatcgagcggttcctgcgcgaacaggtccccgaggtg
aagttcgtcgtcggccacggccagatgagcgcgacccagctggaggaggtgatgagcgcc
ttctacgacggggaatacgacgtgctggtctccaccaccatcgtcgagagcggtctggac
attccgacggccaacaccctggtcgtgcaccgcgccgacatgttcggcctggcccagctt
tatcagatccggggccgggtcggccgctccaaggcgcgggccttcgcctatctgaccacc
gatccggtcaagccgatgaccccgtccgccgagcggcggctgcaggtcctgcagtcgctg
gacaacctgggcgccggcttccagctggccagccacgacctggaccagcgcggcggcggc
aatctgctgggcgacgaacagtcgggccacatccgcgaggtgggcgtcgaactgtaccag
caaatgctggaggacgccgtcgccgagctgaaggagaagggtgagggcggcgcggtcgac
cgcggctggtcgccggcgatcaatgtcggtgcttccgtcctgattccggaagattacgtg
ccggacctgaacgttcgtctcagcctctatcggcgcctgtcggacgccgagcagagcgag
gaccgcgaagccctggccgcggaactgatcgaccgcttcggccccctgccggacgaggcg
cggcagctgttgaaaatcgtcggcatcaaggccaactgccgccgggccaatatcgagaag
atcgacatcgggcccaagggcgcggtcctgacgctgcgcgacaacaccttccccaatcct
gcggggctgatcggcctgatccagaagaaccacgccttctggaagatccggccggatcag
aagatcgtggtgtcgggcgaatggccctcggccgaggatcgactgaaggtcgccgaacgg
atcaccgcagacctggcgcgcgtggcggccgcctga
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