Brevundimonas albigilva: M8231_08380
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Entry
M8231_08380 CDS
T08389
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
balb
Brevundimonas albigilva
Pathway
balb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
balb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
M8231_08380 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
balb03400
]
M8231_08380 (ligD)
Enzymes [BR:
balb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
M8231_08380 (ligD)
DNA repair and recombination proteins [BR:
balb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
M8231_08380 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
URI13856
LinkDB
All DBs
Position
1673510..1676065
Genome browser
AA seq
851 aa
AA seq
DB search
MRGELDTYRGKRDFESTPEPRGRKGRSNRGRLRYLIQRHAATRLHYDFRIEWDGVLKSWA
VTKAPSRDPSVKRLAVEVEDHPLDYGDFEGTIPGGAYGAGTVQMWDTGTWTPQDEDVEAA
FRKGVLKLTLDGERLKGGWALVRLKSDRGKPSKRNNWLLLKEKDDQAVEGEGDALAEIDA
SITTGRSMAEIAGGASRWTRSRPTTRKAPPKPKPTRAAASSSSRPRAFTPLQFAKVVDHP
PGGAGWVHEIKFDGYRIQIAVGGGQAVLRTRSGLDWTDRFPALAAQAATWPDGVIDGELC
ALDADHTPDFSALQAAISDGKTDSLVYFAFDLLFEGDEDLRAKPLSHRKARLQAYCDRVG
KAGPNLRFVDHFASSGEAVLLSACRMDLEGVISKRLDAPYKAGRTVTWVKSKCRGRDEVV
IGGWSSEGGSRLRSLLVGVKDKGGLRYMGRVGTGFSAALTKTLLPALKKAAADESPFAGK
AAPKGGRDIHWLKPVLVAEIEHAGLTEAGSVRQASYKGLREDKAAREVTAQPQPPASAPT
AAKAAKAPAPRGGKVVVAGVTLSHPDKVLWPAQGGRPAVTKADLARYYEAAAPRLLTHVA
QRPVSIVRAPEGIDGERFFQRHAMPGHSPRLALIDVKERKPYVGVSDAGGLVAIGQSGGL
ELHPWGCRPGDPETPDQITFDLDPDEGLDFGDVIAAARMLKPYLEGLGLTPFVKTTGGKG
LHVVVPIKSDSRSRVEWDQAKAFAKAVSEAMRKDHPERFTTTLAKKARGGKIFLDYLRNG
RMATAVAPWSPRARPGATIAFPLSWGQVKAGLDPRAYTIADAAALLKKPDPWKDFRKAEA
SLKPALKKMGL
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggcgaactcgacacctatcgcggcaagcgcgacttcgagagcacgcccgagccg
cgcggccgcaagggtcgctccaatcggggccggctgcgctatctgatccagcgacacgcc
gcgacgcgtcttcactacgatttccgcatcgaatgggacggcgtgctcaagtcctgggcg
gtcaccaaggcgccgtcgcgcgacccgtccgtcaagcggctggcggtcgaggtcgaggac
catcccctcgactacggcgacttcgaagggaccattcccggcggcgcctacggggccggc
acggtgcagatgtgggacacgggaacctggaccccccaggacgaggatgtcgaggccgcc
ttcagaaagggcgtcctgaaattgacgctggacggcgagcgcctgaagggcgggtgggcg
ctggtgcggctgaaatccgatcgcggcaagccgtcgaagcgcaacaactggctgctgctg
aaggaaaaggacgaccaggccgtcgagggcgagggcgacgccctggccgagatcgatgcg
tcgatcaccaccggccgctcgatggccgagatcgccgggggtgcgtctcgctggacccgc
tcgcggcccaccacgcgcaaggccccgcccaagcccaagccgacccgcgccgccgcctcc
agctcgtcccgaccccgcgccttcacgcccctgcagttcgccaaggtggtcgaccatccc
cccggcggcgccggttgggtgcacgagatcaagttcgacggctatcgcatccagatcgcg
gtcggcggcggccaggcggtcctgcgcacgcgcagcggtctggactggaccgatcggttt
cccgccctggccgcccaggccgcgacctggccggatggcgtgatcgacggcgaactgtgc
gcgctggacgccgaccacacccccgacttctccgccctccaggccgccatatcggacggc
aagaccgacagcctggtctatttcgccttcgacctgctgttcgagggggacgaggatctt
cgcgccaagcccctgtcgcatcgcaaggcgcgcctgcaggcctattgcgaccgcgtcggc
aaggccggtccgaacctgcgtttcgtcgaccatttcgcctcctccggcgaggcggtcctg
ctcagcgcctgccgcatggacctggaaggggtcatctccaagaggctggacgcgccctac
aaggccggccgcactgtcacctgggtcaagtccaaatgccggggccgcgatgaggtcgtg
atcggcggctggtcgtccgagggcgggtcgcggctgcgctccctgttggtcggggtgaag
gacaagggcgggctgcgttacatgggtcgcgtcggcaccggcttctcggccgccctgacc
aagaccctgctgcccgccctcaagaaggccgccgcggacgagagccccttcgccggcaag
gccgcgcccaagggcggtcgcgacatccactggctgaaacccgtcctggtggccgagatc
gaacacgccggcctgaccgaggccggctcggtccgccaggcctcctacaagggcctgcgc
gaggacaaggcggcgcgcgaggtgacggcccaaccccagccccccgcgtccgccccgacg
gcggcgaaggccgcgaaggctccggcgccgcgcggcggcaaggtcgtggtggccggcgtg
accctgtcccacccggacaaggtgttgtggccggcccagggcggccggccggcggtcacc
aaggccgacctggcccgctattacgaggcggccgccccgcgccttctgacccacgtcgcc
cagcggccggtgtcgatcgtgcgcgcgcccgaggggatcgacggcgagcgcttcttccag
cgtcacgccatgccgggccacagtccccgccttgcgttgatcgacgtcaaggaacgcaag
ccctacgtcggcgtctccgacgcgggcggcctggtcgccatcggccaatccggcggactg
gagcttcatccgtggggttgccgtcccggggaccccgaaacgcccgaccagatcaccttt
gatctggacccggacgagggcctggacttcggcgacgtcatcgccgccgcacggatgctg
aaaccctatctggagggcctgggcctgacgcccttcgtcaagacgaccggcggcaagggc
ctgcacgtcgtcgtcccgatcaagtccgacagccgcagccgcgtcgaatgggaccaggcc
aaggccttcgccaaggcggtgtcggaggccatgcgcaaggaccatcccgagcgcttcacc
accaccctggccaagaaggcgcgcggcggaaagatcttcctcgactatctccgcaacggc
cgcatggccaccgccgtcgccccctggtcgccgcgcgcccggccgggcgcgaccatcgcc
ttccccctgtcgtggggacaggtgaaggcgggcctggatccccgcgcctacaccatcgcc
gacgccgccgccctgctgaagaagcccgatccctggaaggactttcgcaaggccgaggcc
tcgctgaagccggccctcaagaagatgggtctctag
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