Bacillus sp. LM 4-2: BsLM_0115
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Entry
BsLM_0115 CDS
T03908
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
balm
Bacillus sp. LM 4-2
Pathway
balm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
balm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BsLM_0115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
balm03021
]
BsLM_0115
03400 DNA repair and recombination proteins [BR:
balm03400
]
BsLM_0115
Enzymes [BR:
balm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BsLM_0115
Transcription machinery [BR:
balm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BsLM_0115
DNA repair and recombination proteins [BR:
balm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BsLM_0115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AKE21915
LinkDB
All DBs
Position
125087..128686
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNNFEYMNIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPANTPLEKKQLLSEKEYRAYLDKYGNKFQASMGAEAIHKLLQ
DIDLVKEVDMLKEELKTSQGQRRTRAIKRLEVLEAFRNSGNKPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPHLKMYQCGLPKE
MALELFKPFVMKELVEKGLAHNIKSAKRKIERVQPEVWDVLESVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERAGAVGEGMVFKNTDEALLAYQNGYVHLHTRVAVA
ANSLKNVTFTEEQRSKLLITTVGKLVFNEILPESFPYMNEPTKSNIEEKTPDRFFLEKGA
DVKAVIAQQPINAPFKKGILGKIIAEIFKRFHITETSKMLDRMKNLGFKYSTKAGITVGV
SDIVVLDDKQEILEEAQSKVDNVMKQFRRGLITEEERYERVISIWSAAKDVIQGKLMKSL
DELNPIYMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIIRETDCGTDRGILAKPLKEGTETIERLE
ERLIGRFARKQVKHPETGEVLVNENELIDEDKALEIVEAGIEEVWIRSAFTCNTPHGVCK
RCYGRNLATGSDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQATITEIDGTVVEINEVRDKQQEIVVQGAVETRSYTAPYNSRLKVAEGDKITR
GQVLTEGSIDPKELLKVTDLTTVQEYLLHEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRV
IDAGDTDVLPGTLLDIHQFTEANKKVLLEGNRPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMMKYRKVKPVSNVQPTDDMVPVE
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtgaacaattttgagtatatgaacatcggtcttgcttcaccagataaaatc
cgttcatggtcttttggtgaagtgaaaaagcctgaaacgataaactatcgtacgttaaaa
cctgaaaaggacggtctattctgcgaacgcattttcggaccgactaaggactgggaatgt
cattgcgggaagtacaagcgagttcgttataaaggcgtagtttgtgaccgctgcggagtc
gaagtaacacgggctaaagtccgtcgtgagagaatggggcacattgaactggctgcccca
gtttcccacatttggtatttcaaaggtattccaagccgtatgggtcttgtgctggatatg
tcacctcgtgctttagaagaagtcatttactttgcttcttacgttgtaactgatccggcg
aatacaccgcttgaaaagaaacagcttctgtctgagaaagaatatcgtgcttatcttgat
aaatacggtaataaattccaagcatctatgggtgctgaagcaattcataaacttcttcaa
gatattgatcttgtaaaagaagttgatatgttaaaagaagagctgaaaacttcacaagga
caacgccgtactcgtgcgatcaaacgtcttgaagttttagaagccttccgtaactcagga
aacaagccttcttggatgatccttgatgtgcttcctgttattcctccggagcttagaccg
atggttcagctagatggcggtcgttttgcgacttctgatttgaatgacctttatcgtcgt
gtcatcaaccgtaacaatcgtttgaaacgccttttggaccttggtgcgcctagcatcatc
gttcaaaacgaaaagcgtatgcttcaagaggctgtcgatgccctaattgacaacggccgc
cgcggacgccctgtaacaggtcctggtaacagaccgttaaaatctctttctcacatgctg
aaagggaagcaaggccgtttccgtcaaaaccttcttggtaaacgtgttgattactccgga
cgttctgtaatcgttgttggtcctcatttgaaaatgtaccaatgcggattaccgaaggaa
atggcgcttgaacttttcaaacctttcgttatgaaagaacttgttgaaaaaggtcttgct
cacaacattaagagtgcgaaacgcaaaattgagcgcgtacagcctgaagtttgggatgta
ctagaatcagttattaaggagcatccggtactgctgaaccgtgcccctacacttcacaga
ttaggtatccaggcgtttgaaccaacgcttgttgaaggacgcgcaatccgtcttcacccg
ctcgtatgtacagcttacaacgctgactttgacggtgaccaaatggcggttcacgtacca
ttatctgctgaagcacaagctgaagcacgcatcttgatgcttgctgctcaaaacatcttg
aaccctaaagatggtaaaccggttgtaacaccgtctcaggatatggtactaggtaactat
tacctgacacttgagcgtgccggtgctgtcggtgaaggtatggtcttcaagaatacagac
gaagcgcttcttgcttatcaaaacggatatgttcaccttcatacgagagtagctgttgca
gctaactcacttaagaatgtgacatttaccgaagaacagcgctcaaaattgttaattaca
actgtcggtaagcttgtcttcaatgaaattcttccggaatcattcccttacatgaatgaa
ccaacgaagagcaacattgaagagaaaacacctgaccgtttcttcttagaaaaaggtgct
gacgttaaagctgttatcgcacagcagccaatcaatgcgccgtttaaaaaaggcattctg
ggtaaaatcatcgcggaaatctttaaacgattccatattacggaaacgtctaaaatgctt
gaccgcatgaaaaacctaggtttcaaatattcaacaaaagctggtattacagttggggtt
tctgacatcgtcgtactcgatgataaacaagaaattcttgaagaagcgcaaagcaaagtt
gacaacgttatgaagcagttccgccgcggtcttatcactgaagaagaacgctatgagaga
gtcatctctatctggagtgctgcaaaagacgttatccaaggcaaactgatgaaatcactt
gatgaactcaacccgatctacatgatgagtgactctggtgcccgtggtaacgcatctaac
tttacgcagcttgccggaatgcgcggcctgatggccaacccggctggacgtatcattgag
ttgccgatcaaatcaagtttccgtgaaggtctgacagtattggagtactttatctccaca
cacggtgcgcgtaaaggtcttgccgataccgctcttaaaactgctgactcaggttacctt
acacgccgtctcgttgacgttgcgcaggatgttatcatccgtgaaactgattgcggaact
gaccgaggcattcttgctaagcctcttaaagaaggaactgaaacaattgagcgcttagaa
gaacgcttaatcggacgttttgcaagaaaacaagtgaagcaccctgaaacaggtgaagtg
cttgtgaatgaaaacgaactgatcgatgaagataaagcactggagattgtcgaagccggc
attgaagaagtgtggatccgttctgccttcacatgtaatacgcctcatggtgtatgtaaa
cgatgctatggccgaaatcttgcaactggctccgatgttgaagtcggtgaagctgtcgga
atcattgctgcccaatcaatcggtgagcctggtacacagttaacaatgcgtacattccat
acaggcggggttgccggagacgatatcacacagggtcttccgcgtatccaagagcttttc
gaagcgcgtaatccgaaaggtcaggcaacaattacagaaatcgacggtacagtcgttgag
atcaatgaagttcgtgataagcaacaggaaattgtggttcaaggcgcagtggaaacacgt
tcttatacggcaccttacaactcccgcctgaaagtagcggaaggagataaaattactcga
ggccaagtactgacagaaggttcaatcgatccgaaagaacttcttaaagtgactgacctg
acaactgttcaagagtatcttctccatgaggttcaaaaggtttaccgtatgcagggtgtt
gaaatcggtgataaacacgtagaagtaatggttcgccagatgcttcgcaaagtacgcgtg
attgatgccggtgacactgatgtgcttccaggtacattgcttgatattcaccaatttact
gaagcgaacaaaaaggtattgcttgaaggcaatcgacctgctacaggccgtcctgtctta
ctcggtattacaaaagcatctcttgaaactgattcattcttatctgctgcttccttccag
gaaacaacacgtgtccttacagatgcagcgatcaaaggtaagcgtgacgagcttctcggc
ttgaaagagaatgttatcatcggtaaacttgttccagctggtacaggaatgatgaaatac
cgtaaagtaaaaccagtatcaaatgttcagccgactgacgatatggtcccggttgaataa
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integrated database retrieval system
