Bacillus sp. LM 4-2: BsLM_0484
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Entry
BsLM_0484 CDS
T03908
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
balm
Bacillus sp. LM 4-2
Pathway
balm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
balm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BsLM_0484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
balm03019
]
BsLM_0484
03009 Ribosome biogenesis [BR:
balm03009
]
BsLM_0484
Enzymes [BR:
balm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BsLM_0484
Messenger RNA biogenesis [BR:
balm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BsLM_0484
Ribosome biogenesis [BR:
balm03009
]
Prokaryotic type
rRNA helicases
BsLM_0484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-ProteinID:
AKE22283
LinkDB
All DBs
Position
503566..505050
Genome browser
AA seq
494 aa
AA seq
DB search
MTITFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIP
LVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKK
NPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTL
LFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQS
PELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDV
AARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTT
KRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDHDAVTVVAAAI
KMATKEPDDTPVRLTDEAPMVSKRYKNQRSSKRRDGQGGGYRGGKGKSNNRSSYDKKRSN
DRRSSGDRRQKKSY
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
ttgactataacgtttcaagattttaatttaagttctgatctcatgaaagcaattaatcgt
atgggatttgaagaagcaacaccgattcaggcacaaacgataccgctcggactttcaaat
aaagacgtcattggacaagcgcaaacaggtacaggtaaaacagctgcgtttggtataccc
cttgttgaaaaaattaaccccgagtctcctaatattcaagcaatcgtaatcgcgccaacc
cgtgaattagccattcaagtatctgaagaattgtataaaatcggacaagataaacgtgcg
aaggttcttcctatttacggcggacaggatattggacggcaaatccgggcgttaaagaag
aatccgaatattattgtcggaacacctggacgtcttcttgaccacatcaatcgccgcacc
attcgtttaaacaatgttaatactgttgtaatggatgaagcggatgaaatgctgaacatg
ggattcattgatgatattgaatctatcctttcaaacgtgccaagcgagcatcagacactt
ctgttctctgccacaatgcctgcgccgatcaaacgcattgcagagcgctttatgactgag
ccggaacacgtaaaagtaaaagcgaaagaaatgacggtttctaacattcagcagttctat
ttggaagtgcaagaacgcaaaaaattcgatacactgactcgccttcttgacattcagtct
cctgagcttgcgatcgtattcggacgtacaaaacgccgtgtcgatgagctggctgaagcc
ctgaaccttcgcggatatgcagctgaaggtattcacggtgacttaacgcaggcgaaacgt
atggttgcgcttcgtaaatttaaagaaggcgcaatcgaagttctagtcgcaactgatgtt
gccgctcgcggacttgatatctcaggtgttacacacgtatacaacttcgacgtgcctcaa
gatcctgaaagctacgttcaccgtatcggaagaacgggccgtgcaggaaaaacaggtatg
gcgatgacgttcattacaccgcgtgagaaaagcatgcttcgcgcaattgaacaaacaaca
aaacgcaaaatggaccgcatgaaggagcctacacttgatgaagcgttagaaggccagcag
caggttactgttgaacgtcttcgcacgacaatcagtgaaaacaacctgaacttctacatg
acagcggcagctgagctgcttgaagatcatgatgcagtaacagtggttgcggcggctatc
aaaatggctacaaaagagccagacgacacaccggttcgcttaacagacgaagcgccgatg
gtcagcaaacgctacaagaaccagcgctcttctaaacgcagagacggtcaaggcggcggc
taccgcggcggaaaagggaaaagcaacaaccgttcttcctatgacaaaaagcgttcaaac
gatcgccgttcttcaggtgacagacgccagaaaaaatcttactaa
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