Bacillus sp. LM 4-2: BsLM_1239
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Entry
BsLM_1239 CDS
T03908
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
balm
Bacillus sp. LM 4-2
Pathway
balm03420
Nucleotide excision repair
balm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
balm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BsLM_1239
03430 Mismatch repair
BsLM_1239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
balm03400
]
BsLM_1239
Enzymes [BR:
balm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BsLM_1239
DNA repair and recombination proteins [BR:
balm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BsLM_1239
MMR (mismatch excision repair)
Other MMR factors
BsLM_1239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
AAA_16
Zn_ribbon_NUD
DEAD
Motif
Other DBs
NCBI-ProteinID:
AKE23038
LinkDB
All DBs
Position
complement(1230711..1232990)
Genome browser
AA seq
759 aa
AA seq
DB search
MKCARLNDRIIHLHTYSREHYQFLFEEGIKGHLFCSHCGKPVLLRLNIADPPEFIHRQPG
DFPACEEACEPKPSKEGKKEDDQESGVIRLPKGKAIAADPSPAVTEWHRPRSIKPGTPFV
PKTIEPDTSLFPSVGLNTDQLKAVTETEGPLLVLAGAGSGKTRVLTARAAHMIEHLGIPP
ENMLLVTFTTKAVAEMKERMANQYGLQPAKVRRLVTGTFHSLFYKILYHSNSAKWNGEHL
LKMEWQREQYIKKALYEEGIDEKEFPVDQALQQIGFWKNTYVPNERIPLKDEWEKQVYRL
YEHYERQKKEHSQFDFDDMASACYELFIERPDLLEQYQSRFTYILIDEFQDINPVQYKIM
QMLASPEQNLCCVGDDDQSIYAFRGSNPSFILDFQKDYPGAKTIYLTANYRSTHPIVSSA
DIVVKKNKNRYAKTLEAARDDIQVPVLFYPYDEEEEATMVVSDIKEKIQNGAIPEDFAVL
YRTNSGGRAIYERLHQSSIPYTADRGVQSFYSRRIVRQILAYLYASQNEDDTEAIKHLLP
ALFLKQSALNTLKALSITEDCTMIKALAKLPDLKPFQLDKIKKIVPFFASLRTMKPVEAI
TFAEGKMGFSEYLKKRGNEGNKLEKGSDDLRDIKVVAKKFKTIPDFLAHVDHMRAAEKNR
TDEHGVQLMTIHRSKGLEFKTVYVLGTVDGSIPHDFSLETARKGDEAALEEERRLLYVAM
TRAKQHLYLSCPANRRGKTANRSRFLYPLLQKARQPLHH
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatgcgcccgactgaatgatagaatcatacatttacatacatattcgagagaacat
tatcaattcctctttgaagagggaataaaaggacatttattttgttctcattgcggaaag
cccgttttgttacggcttaacatcgccgatccgccagagtttatccatcgccagccaggc
gattttccggcatgtgaggaggcgtgcgaaccgaagccctctaaagaggggaaaaaagaa
gatgatcaggaatctggtgtcattcgtttacccaagggaaaagcgatcgccgctgacccg
tccccagctgttacagaatggcaccgtcctagaagcattaaaccaggaacaccatttgtg
ccaaaaacaatagaacccgatacgagcctttttccgtctgtcggtttaaacacggatcag
ctgaaagctgtcacggaaacagagggcccgctgctcgtgcttgcaggtgcggggagcgga
aaaacacgggtgctgacagcccgtgccgcccacatgatcgaacacttaggcataccgcct
gaaaatatgctgcttgtcacctttacaacaaaagctgtcgctgaaatgaaagagcgtatg
gcgaaccagtacggattacagccggcaaaagtcagaagacttgtgacaggaacattccac
agtctgttttataagatcttgtatcactctaattctgctaaatggaacggtgagcatctg
ctgaaaatggagtggcagcgggaacaatatatcaaaaaagcactctatgaagaaggcatc
gatgagaaagaattcccagttgaccaagctctgcagcagatcggtttttggaaaaacact
tatgtcccaaatgaacgcatccctctaaaagatgagtgggaaaaacaagtttatcgttta
tatgaacattatgaacgccagaaaaaagaacacagccaatttgattttgatgacatggct
tcagcctgctatgaattgtttatcgagcggcctgaccttctggaacaatatcaatctcgg
tttacgtatatcttaattgatgagtttcaggacattaatccggttcaatacaaaatcatg
caaatgctcgccagtccggagcaaaacctgtgctgtgtcggagacgatgaccagtccatc
tacgcgtttcgcggaagcaatccgtctttcattcttgattttcaaaaggattatccggga
gcgaagacgatctatttaactgcgaactacaggtctacgcacccgatcgtctctagtgct
gatatcgttgtgaaaaagaacaaaaacagatatgccaaaacgcttgaagcggcccgcgat
gacattcaggtccctgtgctgttttatccttatgatgaagaggaagaagccacaatggtc
gtttccgatatcaaagaaaaaattcaaaatggagccattccagaagactttgcggttctt
taccgcacaaacagcggaggccgtgctatttatgaaaggcttcatcaatcgtcaattccg
tatacagctgaccgcggcgtccaatcgttttacagcagacggatcgtccgccagattctc
gcctacttgtatgccagccaaaatgaggatgacaccgaggcgattaaacacttgcttccc
gccttgtttttaaaacagtccgctttgaatacgctgaaggccctctcgattacagaggac
tgtaccatgatcaaagcgctggccaaattgcctgatctgaagccattccagctggacaaa
atcaagaaaatcgtaccgtttttcgcaagcctccgcacaatgaaacccgtagaagccatc
acctttgcagaaggaaaaatgggcttctccgagtatttaaaaaagcggggcaatgagggc
aacaagctggaaaaaggttccgatgacctgcgcgacatcaaggttgtcgccaagaagttc
aaaacgattcctgactttcttgcccacgtagaccatatgagggccgctgagaaaaacaga
acggatgaacatggcgttcagctgatgaccattcaccggtcaaaaggccttgaattcaaa
acagtctacgtgttaggcactgtagacggctcgattccgcacgatttctcattagaaacg
gcaagaaaaggagacgaggccgctcttgaggaggaaagacgccttttatatgtagccatg
acccgggcgaaacagcatttatatttgtcttgccccgctaacaggcgcggcaaaacagcc
aaccgctcaagatttttgtatcccctgctacaaaaagcaagacagcccttgcatcattaa
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