Bacillus sp. LM 4-2: BsLM_2887
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Entry
BsLM_2887 CDS
T03908
Name
(GenBank) formamidopyrimidine-DNA glycosidase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
balm
Bacillus sp. LM 4-2
Pathway
balm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
balm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BsLM_2887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
balm03400
]
BsLM_2887
Enzymes [BR:
balm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BsLM_2887
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BsLM_2887
DNA repair and recombination proteins [BR:
balm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BsLM_2887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
Mrpl_C
Motif
Other DBs
NCBI-ProteinID:
AKE24685
LinkDB
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Position
complement(2828330..2829166)
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AA seq
278 aa
AA seq
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MDVPELPEVETVRRTLTGLVKGKTIKSVEIRWPNIIKRPAEPEEFARKLAGETIQSIGRR
GKFLLFHLDHYVMVSHLRMEGKYGLHQAEEPDDKHVHVIFTMTDGTQLRYRDVRKFGTMH
LFKPGEEAGELPLSQLGPEPDAEEFTSAYLKDRLAKTNRAVKTALLDQKTVVGLGNIYVD
EALFRAGVHPETKANQLSDKTIKTLHAEIKNTLQEAIDAGGSTVRSYINSQGEIGMFQLQ
HFVYGKKDEPCKNCGTMISKIVVGGRGTHFCAKCQTKK
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgccggaattaccagaggttgagacggtccggcgcactctgaccgggcttgta
aagggaaaaacaatcaaatcggtagagatcagatggccgaatatcatcaaacggcctgcc
gaaccggaggaatttgcgcgaaaactagcaggagaaacgatacagtccatcggaagacgg
ggaaagtttttactgtttcatttagatcattatgttatggtttctcaccttcgaatggaa
ggaaaatacggtcttcatcaagccgaggagcctgacgataaacacgtgcatgtcatattc
acgatgacggatggaacccagctccggtacagggatgtgcggaaatttggaaccatgcac
ttatttaaaccgggagaagaagcgggcgagctcccgctttctcagttagggccggagccg
gatgcagaagaatttacaagtgcgtatttaaaagaccggcttgcgaaaacaaaccgcgct
gtcaaaactgccctactggatcaaaaaacggtagttggactcgggaacatttatgtggat
gaggctcttttcagagcgggtgtccatcccgagacaaaagcaaatcaattatcagataaa
acaatcaaaacccttcacgctgaaatcaaaaacactctgcaggaggcgattgatgcgggc
ggaagcacagtccgttcatatatcaactcccaaggggaaatcggaatgttccagctgcag
cattttgtgtacggaaaaaaagacgagccatgcaaaaattgcggaacgatgatttcgaaa
attgtcgttggaggaagaggcacgcatttttgcgcaaagtgccagacaaaaaagtag
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