Bartonella alsatica: HWV54_06495
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Entry
HWV54_06495 CDS
T06670
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bals
Bartonella alsatica
Pathway
bals03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bals00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HWV54_06495 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bals03021
]
HWV54_06495 (rpoC)
03400 DNA repair and recombination proteins [BR:
bals03400
]
HWV54_06495 (rpoC)
Enzymes [BR:
bals01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HWV54_06495 (rpoC)
Transcription machinery [BR:
bals03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HWV54_06495 (rpoC)
DNA repair and recombination proteins [BR:
bals03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HWV54_06495 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QLC52486
UniProt:
A0ABX6QHF9
LinkDB
All DBs
Position
1581505..1585716
Genome browser
AA seq
1403 aa
AA seq
DB search
MNHEVMNLFNPQAPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPGRISTLLDLTLKDIERVLYFENYIVTEPGLTSLKLHQLLSEEEYMLAIDEFGEDQFTA
MIGAEAIYELLASMELEKIANDLRVELSETTSELKQKKLIKRLKIVENFLESGNKPEWMI
MKTIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIVRNEKRM
VQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEHPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIVTEKEPGEGMAFADMGELHHALE
NKILTLHTKIKGRVKNMGKDGKEVSRLYDTTPGRLIIGELLPKNPNISFDIVNKEMTKKN
ISKMIDQVYRHCGQKEIVIFCDRIMQLGFSYACRAGISFGKDDMVIPDSKSRLVAETEAL
AKEYEQQYNDGLITQGEKYNKVVDAWGKCTDRVADEMMKRIQAVEFDPKTGRQRPMNSIY
MMSHSGARGSANQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDAIISAVDCGTAKGLTMQPIVDAGQIVASLGQRILGRT
ALVDILHPVSGEVILEGGAMIEEADVAKIEEAGIQSVQIRSALTCETRLGVCAKCYGRDL
ARGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAQVVDSSHLEASYEGIVEIRNRN
VVRNSEGHLVVMGRNMAILIKDEAGKERVVHRVSYGAHIFVDDGDVVKCGQRIAEWDPYT
RPILTEVEGYVGFEDMIDGLSVTETADESTGITKRLVIDWRANPRGAELKPAIIIHADKK
GNTIAKLHKGGEARYMMSVETILSVEPGSHVKAGDVIARLPMESAKTKDITGGLPRVAEL
FEARRPKDHAIIAEVSGTIRFGRGYKNKRRIIIEPNDEKFESVEYLIPKGKLFHFQEGDQ
IEKGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQK
VEITESGDSGYIPGDNVDRIELDEINDNLIAEGKRPASGNPILLGITKASLQTPSFISAA
SFQETTRVLTEAAVSGKIDTLQGLKENVIVGRLIPAGTGGTIAQIRRIAAVRDDLIVDER
RKSSNNEIAKAMLTNMVTETVSE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacgaggtcatgaatcttttcaatcctcaagcaccagcacagacatttgactct
attcgtatttccattgcgagtcctgaaaagattttatcttggtcgtatggtgagatcaag
aagcctgagactattaattatcggacttttaagccggagcgtgatggtcttttttgtgca
cgtatatttggcccgattaaggattatgaatgtttatgcggtaaatataaacgcatgaaa
tataagggcattatctgtgaaaaatgtggtgtagaggttactctttcgcgcgtacgccgt
gagcgtatgggacatattgagcttgcggcacctgtggctcatatttggttccttaaatcg
ttaccaggacgcatttctacacttttagatttgactttgaaggatattgagcgagttctt
tattttgaaaattatattgtaacagaaccagggttgacatctcttaagcttcatcagctt
ctttctgaagaagaatatatgcttgctattgatgagttcggggaagatcagtttactgct
atgattggtgctgaggctatttacgaacttttagcaagcatggagttagaaaaaatcgcg
aacgatttgcgtgttgaattatctgaaacaacttcggaattaaagcagaaaaaattaatc
aaacgacttaaaattgttgagaattttcttgaatctggcaataaaccagagtggatgatt
atgaaaacaattccagttattccaccggatttacgtccattggttccacttgatgggggg
cgttttgcgacgtcagacctgaacgatctttataggcgggttataaatcgtaataaccga
ttgaaacgacttattgagttgcgtgctcctggaattattgtgcgcaatgaaaagcgtatg
gtgcaggaagctgttgatgcattgtttgataatggtcggcgtgggcgtgtaattactgga
gcaaataagcgtccgctcaagtctctttcagatatgctcaagggtaaacaaggacgtttc
cgtcaaaacttacttgggaagcgtgttgattattctgggcgttctgttattgtgacaggt
cctgaattgaaattgcatcaatgtggtcttcccaaaaaaatggctttggaattatttaag
ccatttatttacgctcggcttgatgcgaaagggtattcgtcaactgtaaaacaggcaaag
aagcttgttgaaaaagagcatccggaggtttgggatattttggatgaagttattcgtgag
catcctgttttgctcaatcgtgcaccaacattgcaccgtttagggatccaggcttttgaa
cctatcttgattgaaggcaaagctatccagcttcatccgttggtgtgtaccgcttttaat
gcggattttgatggtgatcagatggcggttcacgttccactttctcttgaagcacagctt
gaagcccgtgttttgatgatgtcgaccaataatattcttcatccagccaatggtgcccca
attattgttccatcacaggatatggttcttggtctttactatctttcgatcgtgactgaa
aaagaaccgggagaggggatggcttttgccgatatgggtgagctccatcatgctttggaa
aataagattttaactcttcatacgaagattaaaggccgtgttaaaaatatgggtaaggat
ggaaaagaggtttctagactttacgacacaacacctggccgtttgattattggagaactt
ttgccgaaaaaccccaatatttcatttgatattgtcaataaagaaatgactaaaaagaat
atttctaaaatgattgatcaagtttatcggcactgtggacagaaagagatagttattttt
tgtgatcgtattatgcagcttggcttttcgtatgcttgtcgtgcggggatttcatttggc
aaggacgatatggttatccctgatagcaagtcgcgtttggttgcagaaacggaagctttg
gctaaagaatatgaacaacaatataatgatggcctgattacgcaaggtgaaaaatataac
aaggttgtagatgcgtggggtaaatgtacggatcgcgttgcggatgaaatgatgaaacgt
attcaagcagttgaatttgatccaaaaacaggacgtcagcgtccaatgaattcaatttat
atgatgtcacattctggtgcgcgtggttctgctaaccagatgaagcagttggcaggtatg
cgcggattaatggcaaagccatcaggtgaaattattgaaaccccaattatttcaaacttt
aaagaagggctaacagttaacgaatactttaattcgactcacggtgctcgaaaagggctt
gctgatactgcgctaaaaacagctaactctggttatttaacacggcgtcttgttgatgtt
gcccaggatgctattatttcagcggttgattgtggtactgcaaaggggctaactatgcag
ccgattgttgatgcagggcaaattgtcgcatctcttgggcaaagaattcttggtcgcaca
gcgcttgttgatattttgcatccagtctctggagaagttatccttgaaggtggagcaatg
attgaggaagctgatgttgctaagattgaagaagccggaattcagtcagttcaaattcgc
tctgctttaacatgtgaaacacgtcttggtgtttgtgctaaatgctacggtcgtgatttg
gcacgtgggacaccagttaatcagggggaggcagttggtgttattgctgctcaatccatt
ggtgaaccgggaactcagcttactatgcgaacctttcacttaggaggaacggcgcaagtt
gttgattcatctcatttagaggcttcttatgaaggcatcgtagagattcgtaatcgcaat
gtagttcgtaattctgaaggtcatttggtggtcatgggacgtaatatggctatccttata
aaagatgaggctggaaaagagcgtgtagtgcatcgtgttagttatggtgcgcatattttt
gttgatgatggtgacgtggttaaatgtggccaacgtatagcagaatgggatccctataca
cgtccgattttaactgaagttgaggggtatgtaggctttgaggatatgattgatggttta
tcagttactgaaacagccgatgaatctacaggtattaccaagcgtttggtgattgattgg
cgtgctaatccgcgtggcgctgagctaaaaccagccattattattcacgcagataaaaag
ggtaacaccattgctaaattgcataagggaggtgaagcccgttacatgatgtcagtggaa
actattctttctgttgagcctggttctcatgttaaagccggtgatgttattgctcgcttg
ccgatggaaagtgctaagacaaaagatattacaggtggtttaccacgtgtagccgagctt
tttgaagcgcggcgtccaaaggaccatgctatcattgctgaggtcagtggtacaatacga
tttgggcgtggttataaaaataaacgtcgtattatcattgaaccaaatgatgaaaagttc
gagtccgtagaatatttgattccaaaaggaaaattgtttcattttcaagaaggtgaccag
attgaaaaaggagattatatcctcgatggtaatccggcacctcatgatatcttagcaatt
aaaggtgttgaagctttagcatcttatcttgttaatgaaattcaagaagtttaccgtttg
caaggtgttttgattaatgacaagcatattgaagtgatcgttcgtcaaatgttgcaaaag
gttgaaattactgaatctggagattctggttatattccaggtgataatgttgaccgtatt
gaattagatgagatcaatgataatttgattgcagaagggaagagacctgcatctggtaat
cctatccttcttgggattacaaaagcttctcttcaaactccctcttttatttcggcagca
tcatttcaggaaacaacaagggtgcttacggaggcagcagtttctggtaaaattgatact
ttgcaaggtcttaaggagaatgttattgtcggtcgtcttattcctgcaggtacaggtggt
acgattgctcaaattcgtcgtatcgctgcagttcgtgatgatttaattgtagatgaacga
cgcaaatctagcaataatgagatagctaaggctatgttgacaaatatggtaactgaaaca
gtttctgaataa
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integrated database retrieval system
