Burkholderia ambifaria AMMD: Bamb_0954
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Entry
Bamb_0954 CDS
T00398
Name
(GenBank) Exonuclease, RNase T and DNA polymerase III
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
bam
Burkholderia ambifaria AMMD
Pathway
bam03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
bam00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Bamb_0954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bam03019
]
Bamb_0954
03009 Ribosome biogenesis [BR:
bam03009
]
Bamb_0954
Messenger RNA biogenesis [BR:
bam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bamb_0954
Ribosome biogenesis [BR:
bam03009
]
Eukaryotic type
Pre-60S particles
RNases
Bamb_0954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
ABI86513
UniProt:
Q0BH60
LinkDB
All DBs
Position
1:1044642..1045262
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AA seq
206 aa
AA seq
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MTDTAASASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAI
HQSDETLAKMDDWNKSTHGRSGLIDRVRASTVTEADAAAQLQAFLAQYVSPGKSPMCGNS
ICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESI
DELKYYRQHFLIPAASAPAGESAPAA
NT seq
621 nt
NT seq
+upstream
nt +downstream
nt
atgaccgataccgccgcttccgccagccagcccgcgctcgtgcgcaacgagttgaacctc
gtctggctcgacatggagatgacgggcctcgacccggataacgaccgcatcatcgaaatc
gcggtcgtcgtgaccaattccaccctcgacatcgcggtggaaggccccgtgttcgcgatc
caccagagcgacgaaacgctcgcgaagatggacgactggaacaagtcgacgcacggccgt
tcggggctgatcgatcgcgtgcgcgcgtcgaccgtgaccgaggcggacgccgccgcgcag
ctgcaggcgttcctcgcgcagtacgtgtcgcccggcaagtcgccgatgtgcggcaactcg
atctgccaggatcgccgcttcatggcgcgctggatgccggaattcgagcggttcttccac
taccgcaacctggacgtcagcacgctcaaggagctgtgccgccgctggcagcccgcgatc
tacaagggttttcagaagcgcgcgatgcacacggcgctcgcggacatccacgagtcgatc
gacgagctgaagtactaccgccagcatttcctgattccggccgcgtcggcgccggcaggc
gagtccgcgccggccgcctga
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