Burkholderia ambifaria AMMD: Bamb_0986
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Entry
Bamb_0986 CDS
T00398
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bam
Burkholderia ambifaria AMMD
Pathway
bam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bamb_0986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bam03019
]
Bamb_0986
03009 Ribosome biogenesis [BR:
bam03009
]
Bamb_0986
Enzymes [BR:
bam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Bamb_0986
Messenger RNA biogenesis [BR:
bam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bamb_0986
Ribosome biogenesis [BR:
bam03009
]
Prokaryotic type
rRNA processing factors
Bamb_0986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABI86545
UniProt:
Q0BH28
LinkDB
All DBs
Position
1:complement(1075614..1078820)
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AA seq
1068 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKDGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRTADVKPKQEAAVKGITPER
PAPSAAPQRPAEPVVAAPAPVAVASNGGFIGWLKGLFGMSPAPAPAPVVPAPAKEQAARP
ARERTEKTEQRGGDRNRNRRGGAQQAQGGRDQAATGRGQSQRQEREGKEIREPREPREPR
EGREPRESREPRESREGREGREGRGPREGREPREPRESRESREPRESREPRERVEQPEAV
EAGGRGERQERGERRERGERRKPVQHAATLETVNRGENHPEAEADQAVAALPGADIGADA
EAGARDGEERRRRRRGRRGGRREREDDGSVVEHAEQGADGEAPVHAVTTEAPNAVEPARA
AAPVAVASMAAVSAAGAAVAEAEVEERAEAVAPAAVESQTAPVRVEATPVAPLEPAPVAP
AAEPAPVTPAAESEAGPAPVAVSPTDAFEVPAAPAAVEAPQSAPVEQAAPAPVVAAEVAP
APVAPAPVAPVHVAPVHVEPARVEAAPAPAPAPAPAPAPAQPAAAPASASLDAVLEQAGL
VWVNTDADKFRAAQEAASRLPRPARVPRERKAQPPVDPTPMQQVETHR
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaggagctgcgcgtcgccatcgtcgat
gggcaaaagctcatcgacatcgacatcgagacagccgggcgcgaacagcgcaaaggcaat
atctacaaaggtgtcatcacccgtatcgagccgtcgctcgaagcgtgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggac
ggcatcgacatgcgctccgcgcgcatccaggatgcgctgcgcgaaggccaggaactgatc
gttcaggtcgagaaggaagagcgcggcaacaagggcgccgccctcacgaccttcatctcg
ctcgccggccgctacctcgtgctgatgccgaacaatccgcgcggcggcggcgtgtcgcgc
cggatcgaaggcgacgagcgccaggaactgcgcgaaacgatggcgcagctgcagattccg
gacggcatgagcatgatcgcccgcaccgcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcagctgtggcgcgcgatcgaagcggcgtcgcaaagcggc
aatgccggccagccgatgctgatctatctggaatcgagcctcgtgatccgcgcgatccgg
gactatttccagcccgatatcggcgaaatcctgatcgacacgaccgagatccacgatcag
gcccgtgcgttcatggacatcgtgatgccggacaacgtgtcgaaggtgaagcgctaccac
gacgacgtgccgctcttctcccgcttccagatcgagcaccagatcgagacggcctactcg
cgcacggtgccgctgccgtccggcggcgcgatcgtgatcgaccacaccgaagcactcgtc
gcgatcgacgtgaactcggcgcgcgcgaccaagggcgcggacatcgaggaaacggcgacc
cgcacgaacctcgaggcggcggacgaagtggcccgccagctgcgactgcgcgacctcggc
ggcctgatcgtgatcgacttcatcgacatggagtcggccaagagccagcgtgaggtcgag
cagcgcctgaaggacgcgctcaagcacgaccgtgcgcgcgtgcagatgggcaagatctcc
cgcttcgggctgatggaactgtcgcgccagcgcctgcgtccggcgctgtcggaaggcagc
cacgtgacgtgcccgcgctgtaacggcaccggccacatccgcgataccgaatcgtccgcg
ctgcaggtcctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaggtgaccgccttcctgctcaacgagaagcgtcaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcatcgtgctgatcccgaacaagcacctcgatacg
ccgcactacaagctcgagcgcctgcgccacgacgacgcgcgcctcgacgatccgcgcgcg
tcctggaagatggccgaggaagccgcccgcgaactggagtcggaaaccggctacagcaag
cgcacggccgacgtgaagccgaagcaggaagcggcggtcaagggcatcacgcccgagcgc
ccggcgccgagcgcggcaccgcagcgcccggccgagccggttgtggcggcgcccgccccg
gtcgccgtggcaagcaacggcggcttcatcggctggctgaagggtctgttcggcatgtcg
ccggctccggcgcccgcgccggttgtaccggcaccggcgaaggaacaggctgcccgcccg
gcccgcgagcggaccgagaagaccgagcagcgcggcggcgatcgcaaccgcaaccgccgt
ggcggcgcccagcaggctcagggtggccgcgaccaggcagcgacgggccgtggccagtcg
caacgccaggaacgcgaaggcaaggaaattcgcgagccgcgtgaaccgcgtgaaccgcgc
gagggtcgtgaaccgcgtgaaagccgcgagccgcgcgaaagccgtgagggtcgcgaaggt
cgtgagggccgtggcccgcgcgaaggccgcgaaccgcgcgagccgcgtgaaagccgtgag
agccgcgagccgcgcgagagtcgcgaaccgcgcgagcgcgtcgagcagccggaagccgtc
gaggccggcggccgcggcgagcgccaggaacgcggcgaacgtcgcgagcgtggtgagcgc
cgcaagccggtgcagcacgcggcgacgctcgagaccgtcaaccgtggcgagaaccatccg
gaagcggaagcagaccaggcagtcgcagcgctgccgggcgccgatatcggtgccgacgcg
gaagccggcgcacgtgacggcgaggaacgtcgccgtcgccgccgcggccgccgcggtggt
cgtcgcgagcgcgaggacgatggttcggtggtcgagcacgccgagcaaggtgcagatggc
gaagcccccgtgcacgccgtgacgacggaagccccgaacgcggtcgagccggcccgtgcg
gccgcaccggtcgccgtggcgtccatggcagccgtttcggcagcaggcgccgcagttgcg
gaagccgaagtcgaggagcgtgccgaagcggtcgcaccggccgcggtcgagtcgcaaacg
gcacccgttcgtgtcgaagcgacgccggtcgcaccgctcgagcccgccccggtcgcaccg
gcagccgaaccggcaccggtcacgccggccgctgaatcggaagccggcccggctccggtc
gcggtttcgccgaccgatgcgttcgaagtgccggccgcaccggctgccgtcgaagcgccg
cagtccgcgcccgtcgagcaagccgcaccggcaccagtcgtcgcagctgaagtcgctccg
gcacccgtcgcgccggcaccggtcgctccggttcacgtcgctccggttcacgtcgaaccg
gctcgcgtcgaagccgcaccggctccggctccggctccggctccggctccggcgcccgcc
cagccggccgccgcgcctgcttcggcgagcctcgatgccgtgctggagcaagccggtctc
gtgtgggtgaacacggacgccgacaagttccgcgctgcccaggaagccgcgtcgcgcctg
ccgcgtccggcccgcgtgccgcgcgagcgcaaggcgcagccgccggtcgacccgaccccg
atgcagcaggtcgaaacgcaccgctaa
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