Burkholderia ambifaria AMMD: Bamb_1099
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Entry
Bamb_1099 CDS
T00398
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
bam
Burkholderia ambifaria AMMD
Pathway
bam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Bamb_1099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bam03400
]
Bamb_1099
Enzymes [BR:
bam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Bamb_1099
DNA repair and recombination proteins [BR:
bam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Bamb_1099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
UvrD-helicase
SH3_13
Helicase_RecD
SLFN-g3_helicase
DEAD
RecD_N
AAA_22
AAA_25
MukB
ATPase
CbiA
Motif
Other DBs
NCBI-ProteinID:
ABI86658
UniProt:
Q0BGR5
LinkDB
All DBs
Position
1:1206803..1209127
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AA seq
774 aa
AA seq
DB search
MNASDDTLEFTGGLVARLPEPADFGIALAEGFARRMGDLSRRAGAPAVAARWAARAAFAT
SRATAGGHVCVSLGALAQRYEEPVDDVRAALAASGVVAFGTLARGDERPLIVDRLDHLYL
SRYFDYERRLADALVAQAGVAAPGDALSPERLRDSLARYFGPATGEVDWQRVAAIVALTG
RVTIVSGGPGTGKTTTVVGVLACLLDAHPGLRIALAAPTGKAAQRMQEALHARAGDLPPE
LAARLPDTSYTLHRLLGGGGAAGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPG
ARLVLLGDKDQLAAVEAGAVFAELSARPTFTAAARTRIAGALGIDEATFVAALPVPDGEA
AAVVAPALAPASAPAPASAPVSTSAARKPPARRNVDTRQASLFDDDPQDEAMSATDVAAP
PAASLSPAAAAPTDIDSGAVADPAWIEADELAWLDAIELAPFDPADVVNAANAADSSLAS
TVATQPDDHAAASPAPAPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQAALDALPTD
DAAAASFHDDASDTLAASTVERLARRFGAYLDALRTALSEPVPDPLPLFDALNRFRILCA
TRTGSRGAEHVNALVATHVRHAARVPLAVGAHWFTGRPIMVTRNDYALGLFNGDIGIALP
DAHGVLRVWFRRADGTARAVSLAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLT
RELVYTAVTRARTRVQVIGPRRVLAQAVATRTQRDSGLAARVEALARRRKEPSR
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgtccgacgatacgctcgaattcaccggcggcctcgtcgcgcgcctgcccgag
cccgcggatttcggcatcgccctcgcggaaggattcgcgcgccgcatgggcgacctgtcg
cgccgcgcgggtgcgccggccgtggccgcccgctgggcggcgcgtgccgcgttcgcgacg
agccgggcgaccgcgggcggccacgtgtgcgtgtcgctcggcgcgctcgcgcagcgctac
gaggagccggtcgacgacgtgcgcgcggcgcttgccgcgagcggcgtggtcgcgttcggt
acgctcgcgcgcggcgacgagcggccgctgatcgtcgaccggctcgaccatctgtatctg
tcgcgctatttcgactacgaacggcggctcgccgatgcgctcgtcgcgcaggccggcgtc
gccgcaccgggcgacgcgctgtcgcccgagcgcttgcgcgacagtcttgcgcgttacttc
gggcccgcgacgggcgaggtggactggcagcgcgtcgccgcgatcgttgcgctgaccggg
cgcgtgacgatcgtcagcggcggccccggcaccggcaagacaacgaccgtcgtcggcgtg
ctggcttgtctgctcgacgcgcatccggggctgcgcatcgcgctggcggcgccgaccggc
aaggccgcgcagcgcatgcaggaagcgctgcacgcgcgggcgggcgacctgccgccggaa
ctcgccgcgcgcctgcccgacacgtcgtacacgctgcatcgcctgctgggcggcggcgga
gcggcgggcttccgccatcaccgcgacaatccgttgccgtatgacctgatcgtcgtcgac
gaggcgtcgatgatcgacgtcgcgctcgccgcgcatctgctcgatgcgctcgcgcccggc
gcacggctcgtgctgctgggcgacaaggatcagctcgccgcggtcgaggccggcgccgtg
ttcgccgaactcagcgcacggccgacgtttaccgccgcggcacgcacgcgcatcgcgggt
gcactcgggatcgacgaggcgactttcgtcgcggcgttgccggtgcccgacggcgaggcg
gcggcggttgtggcgcccgctctagctccggcctcagcgccagctccggcatccgcgccg
gtgtcgacgagcgccgcgcgcaagccgccggcgcgacggaacgtggatacgcgccaggcg
tcgctgttcgacgacgatccgcaggacgaagcgatgtccgctaccgatgtcgccgcgccg
ccggccgcttcgttgtcacctgcggcggccgcgccgaccgacatcgatagtggcgcggtc
gccgatccagcatggatcgaagccgacgaactcgcgtggctcgatgcgatcgagctcgcg
ccattcgatccggccgatgtggtcaatgcggccaatgcagccgattcgtcgcttgcatcg
accgtcgcaacgcaacccgacgaccacgccgcagcgtcacccgcgcccgcaccgcttgca
gactgcgtcgtgtggctcgaacgcaattaccgtttcggtctcgattcgccgatcggccgc
ctgtcgctggcgatccgccgcggcgacgtgcaggccgcgctcgatgcgttgccgaccgac
gatgccgctgccgcgtcgtttcatgacgacgcgagcgatacgcttgcggcgtcgacggtc
gagcggctcgcgcgccggttcggcgcgtacctcgacgcattgcgtactgcgttgtccgag
ccggtgcctgacccattgccgctgttcgatgcgctcaaccgcttccggatcctctgcgcg
acgcgcacggggtcgcgcggcgccgagcacgtcaatgcgctggtggccacgcacgtgcgg
catgccgcgcgcgtgccgctcgcggtcggcgcacactggttcaccgggcggccgatcatg
gtcacgcgtaacgactatgcgctcgggctgttcaacggcgacatcggcattgcgttgccg
gacgcgcacggtgtgctgcgcgtgtggttccggcgcgcggacggcaccgcgcgcgccgtg
tcgctcgccgcgctgccgccgcacgaaacggcgttcgcgctgacagtccacaagtcgcag
ggctcggaattcgacgaggccgcgctcgtgctgccggcgtcgttcgggcgtgtgctcacg
cgcgaactcgtctatacggccgtcacgcgtgcacgcacgcgcgtacaggtgatcggcccg
cggcgcgtgctcgcgcaggcggtcgcgacgcgcacgcaacgcgattcgggcctcgcggcc
cgcgtggaggcgctcgcgcggcgtcgcaaggagccgtcgcgatga
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