Burkholderia ambifaria AMMD: Bamb_1932
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Entry
Bamb_1932 CDS
T00398
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bam
Burkholderia ambifaria AMMD
Pathway
bam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bamb_1932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bam03400
]
Bamb_1932
Enzymes [BR:
bam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bamb_1932
DNA repair and recombination proteins [BR:
bam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Bamb_1932
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
Glyco_tran_WecG
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABI87488
UniProt:
Q0BED5
LinkDB
All DBs
Position
1:2126293..2129850
Genome browser
AA seq
1185 aa
AA seq
DB search
MKSRSGFYNRSFVSTGAPRRAVPATPAVPMPDNASIPFASPVARVKPGQRFAFDGTHGSA
DALAIARYLAENRAAVPLLAVICANAVDAQRLSQELRYFSPDARVRLLPDWETLPYDTFS
PHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFMAAYTFAFAQGERLDEAKLK
AQLTLAGYEHVSQVVRPGEYCVRGSLIDLYPMGSPLPYRIDLFDDQVDSIRAFDPDTQRS
LYPVREVRLLPGREFPFDEAARTAFRSRWRETFEGDPSRAPIYKDIGNGVPSAGIEYYLP
LFFDETATLFHYLPQDAHLVFTGDLEASIRRFTADTKQRHAFLSHDRERPILEPQRLFLS
DEDFFAFAKPFARVVLPAQPAGGWATGLPELTVDRHADDPLAALRTFVESSGKRVLLTVE
SAGRRETILQLLAEHHLRPASNDHFAGWLESDAPFALGVAPLASGFAVPGEGYAIVTETE
LYGALGRRAGRRRQEQASNVDAMVRDLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETE
FLHLEYAGDSKLYVPVAQLHVISRYSGADPDSAPLHALGSGQWERAKRKAAQQIRDTAAE
LLNLYARRAAREGHAFALDPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVC
GDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHTQTFVDRFADWPVRIVELSRFK
TTKEVNAAIAQINEGTVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRA
EVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESVIREAMLRELK
RGGQVYFLHNEVETIENRRAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLC
TTIIETGIDVPSANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQ
RRLEAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQLYTDMLNDAVKALK
NGKEPDLTAPLAATTEINLHAPAILPADYCADVQERLSLYKRLANCEHGDAIDGIQEELI
DRFGKLPPQAHALVETHRLRLAAKPLGIVKIDASEAAIGLQFEPNPPIDPMRIIDMVQKH
RHIKLAGQDKLRIETRSPDLAIRVSTIKETLRALAPRADAASAAR
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgagaagcggattttataataggtctttcgtctcgaccggcgcgccgcgccgc
gccgtgcccgccacccctgccgtccctatgccagacaacgcttccatcccgttcgcctcg
cccgtcgcccgcgtcaaaccgggccagcggttcgccttcgacggcacgcacggctccgcc
gacgcactcgccatcgcccgctatctcgccgagaaccgcgccgcggtgccgctcctcgcg
gtgatctgcgcgaacgcggtcgacgcgcagcggctgtcgcaggaactccgctacttctcg
cccgatgcgcgcgtgcgcctgctgccggactgggaaacgctgccgtacgacacgttctcg
ccgcaccaggatctcgtctccgagcggctcgcgacgctgcacgacctcggcgagggccgc
tgcgacatcctgctggtgcccgcgaccaccgcgctgtaccggatgccgcccgcgtcgttc
atggccgcgtacaccttcgcgttcgcgcagggcgagcggctcgacgaggcgaagctgaag
gcgcagctcacgctggccggctacgaacacgtgagccaggtcgtgcggcccggcgaatac
tgcgtgcgcggctcgctgatcgacctgtacccgatgggctcgccgctgccgtaccggatc
gacctgttcgacgaccaggtcgactcgatccgcgcgttcgatcccgatacgcagcgcagc
ctctacccggttcgcgaagtgcgcctgttgcccggccgcgagtttccgttcgacgaagcc
gcgcgcacggcctttcgcagccgctggcgcgagaccttcgaaggcgacccgagccgcgcg
ccgatctacaaggacatcggcaacggcgtgccgtcggccggcatcgagtactacctgccg
ctgttcttcgacgagacggccacgctgttccactacctgccgcaggacgcgcacctcgtg
ttcaccggcgatctcgaggcgtcgatccgccgcttcacggccgatacgaagcagcgccac
gcgttcctctcgcacgaccgcgagcggccgatcctcgagccgcagcgcctgttcctgtcc
gacgaggatttcttcgcgttcgcgaagccgttcgcgcgcgtcgtgctgcccgcgcagccg
gccggcggctgggcgacgggcctgcccgagctcacggtcgatcgccatgccgacgatccg
ctcgccgcgttgcgcacgttcgtcgaatcgtcgggcaagcgcgtgctgctgacggtcgaa
tcggccggccgccgcgaaacgatcctgcaactgctcgccgagcatcacctgcgccccgcg
tcgaacgaccacttcgcgggctggctcgaaagcgatgcgccgttcgcgctcggtgtcgcg
ccgctcgcgagcggcttcgcggtgccgggcgaaggctacgcgatcgtcaccgaaaccgag
ctgtacggcgcgctcggccggcgcgcgggccggcgccgccaggaacaggcaagcaacgtc
gacgcgatggtgcgcgacctgtcggagctgaaggtcggcgacccggtcgtccatgcgcag
cacggcatcggccgctacatgggcctcgtgtcgatggatctcggcgaaggcgagaccgaa
ttcctgcacctcgaatacgcgggcgacagcaagctctacgtgccggtcgcccaattgcac
gtgatctcgcgctacagcggcgccgatcccgacagcgcaccgctgcacgcgctcggctcg
ggccagtgggagcgcgcgaagcgcaaggccgcgcagcagattcgcgacacggcggccgag
ctgctgaacctgtacgcgcgccgcgcggcccgcgaaggccatgcgttcgcgctcgatccg
cgcgactacgtgaagttcgcggagagcttcggcttcgaggagacgcccgaccaggccgcg
gccatcgcggccgtgatcggcgacatgacgagcggcaagccgatggaccgcctcgtgtgc
ggcgacgtcggcttcggcaagaccgaggtcgcgctgcgcgccgcgttcatcgcggtgatg
ggcggcaagcaggtcgcgctgctgtcgccgaccacgctgctcgccgagcagcacacgcag
accttcgtcgaccgcttcgcggactggccggtgcgcatcgtcgagctgtcgcgcttcaag
accacgaaggaagtgaatgcggcgatcgcgcagatcaacgaaggcactgtcgacatcgtg
atcggcacgcacaagctgctgtcgtcggacgtgcagttcaagcgcctcggcctcgtgatc
atcgacgaggaacaccgcttcggcgtgcgccagaaggaagcgctgaaggcgctgcgcgcg
gaagtcgacgtgctgacgctgaccgccacgccgatcccgcgtacgctcgggatggcgctc
gaggggctgcgcgacttctcggtgatcgcgaccgcgccgcagaagcggctcgcgatcaag
accttcgtgcgccgcgaggaagaaagcgtgatccgcgaggcgatgctgcgcgagctgaaa
cgcggcggccaggtgtacttcctgcacaacgaggtcgagacgatcgagaaccgcagggcg
atgctcgaggaactcgtgcccgaggcgcgcatcgtgatcgcgcacggccagatgcacgag
cgcgaactcgaacgcgtgatgcgcgatttcgtcgcgcagcgcgcgaacgtgctgctgtgc
acgaccatcatcgagaccggcatcgacgtgccgagcgcgaacacgatcatcatgcaccgc
gcggacaagttcggcctcgcgcagcttcaccagctgcgcggccgcgtcggccgttcgcac
caccaggcgtatgcgtacctgctggtccacgatccgcagtcgctgaccaagcaggcgcag
cgccggctcgaggcgatccagcagatggaggagctcggttcgggcttctatcttgcgatg
cacgacctcgagatccgcggcaccggcgaggtgctcggcgacaagcagtcgggcgagatc
cacgagatcggcttccagctgtataccgacatgctgaacgacgcggtgaaggcgctgaag
aacggcaaggagcccgacctcaccgcaccgctcgccgccacgacggaaatcaacctgcat
gcgcccgcgatcctgccggccgactactgcgcggacgtgcaggagcggctgtcgctgtac
aagcgtctcgcgaactgcgagcatggcgacgcgatcgacggcatccaggaagagctgatc
gaccgcttcggcaagctgccgccgcaggcgcacgcgctcgtcgagacgcaccggctgcgg
ctggccgcgaagccgctcggcatcgtcaagatcgacgcgagcgaggccgcgatcgggctg
cagttcgagccgaacccgccgatcgatccgatgcgcatcatcgacatggtgcagaagcac
cggcacatcaagctcgcgggccaggacaagctgcgcatcgagacgcgctcgcccgatctc
gcgatccgcgtgtcgacgatcaaggaaacgctgcgcgcgctggcgccgcgcgccgacgcc
gcgagcgcggcccgctga
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integrated database retrieval system
