Burkholderia ambifaria AMMD: Bamb_2248
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Entry
Bamb_2248 CDS
T00398
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
bam
Burkholderia ambifaria AMMD
Pathway
bam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bamb_2248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bam03400
]
Bamb_2248
DNA repair and recombination proteins [BR:
bam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Bamb_2248
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Bamb_2248
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
DEAD
UVR
AAA_30
UB2H
Kinesin
DUF6827
FlaG
Motif
Other DBs
NCBI-ProteinID:
ABI87804
UniProt:
Q0BDG9
LinkDB
All DBs
Position
1:complement(2479822..2481912)
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AA seq
696 aa
AA seq
DB search
MSEHHAEVGDALDESKFVTFEGSPFQLYQPYPPAGDQPTAIETLVEGVGDGLAFQTLLGV
TGSGKTFTMANTIARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEA
YVPQRDLFIEKDSSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHKMILT
LRAGDKLGQRDVIARLIAMQYSRNDQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDE
VETLQLFDPLTGRVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHRDGKL
VEAQRLEQRTRFDLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDES
HVLIGQLNGMYNGDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE
KRVTGQIAEQVVRPTGLVDPEIEVRPASSQVDDVLTEINARVNAGERVLITVLTKRMAEQ
LTEFLADHGVKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAIL
DADKEGFLRAERSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAHNEK
MGITPRGVVKRIKDIIDGVYNADDARAELKEAQQRAKFEDMSEKQIAKEIKRLEKQMADY
AKNLEFEKAAATRDQLALLRERVFGANVGDHVNGGR
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaacatcacgccgaagtcggcgacgcgctcgacgaatcgaaattcgtgaccttc
gaagggtcgccatttcagctataccagccgtatccgcccgcaggcgaccagccgaccgcg
atcgaaacgctcgttgaaggtgtcggcgacggcctcgcattccagacgctgctcggcgtg
acggggtcgggcaagaccttcacgatggcgaacacgatcgcgcggctcggccgcccggcg
atcgtattcgcgccgaacaagacgctcgcggcgcagctctacgcggagttccgcgagttc
ttcccgcgcaacgcggtcgagtatttcgtctcgtactacgactattaccagccggaagcg
tacgtgccgcagcgcgacctgttcatcgagaaggactcgtcgatcaacgagcatatcgag
cagatgcggctgtcggcgacgaagagcctgatggagcgccgcgacgtggtgatcgtcgcg
acggtgtcggcaatctacggtatcggcaacccgtccgagtaccacaagatgatcctgacg
ctgcgcgccggtgacaagctcggccagcgcgacgtgatcgcgcgattgatcgcgatgcag
tactcgcgcaacgatcaggacttccagcgcggcacgttccgcgtgcgcggcgacacgatc
gacatcttcccggccgagcatgcggagatggccgtgcgcgtcgagctgttcgacgacgag
gtcgagacgctgcagctgttcgacccgctgacgggccgcgtgcggcagaagattccgcgc
ttcacggtgtatccgtcgtcgcactacgtgacgccgcgcgacaccgtgatgcgtgcggtc
gagacgatcaaggaggaattgcgcgagcgcctcgagttcttccaccgcgacggcaagctc
gtcgaggcgcagcgcctcgagcagcgcacgcgcttcgatctcgagatgctgcaggaactc
ggcttctgcaagggcatcgagaactactcgcggcatttttcgggcgccgcgcccggcgag
ccgccgccgacgctcgtcgactacctgccgcccgacgcgctgatgctgctcgacgaatcg
cacgtgctgatcggccagctgaacggcatgtacaacggcgaccgcgcgcgcaaggagaat
ctcgtcaactacggattccggttgccgtcggcgctggacaaccggccgctcaagttcccg
gagttcgaacgcaagatgcgccaggtggtgttcgtgtcggctacgcctgccgactacgag
aagcgcgtgacggggcagatcgccgagcaggtggtgcggccgacgggcctcgtcgatccg
gaaatcgaagtgcgcccggccagctcgcaggtcgacgacgtgctgaccgagatcaacgcg
cgcgtgaacgccggcgagcgcgtgctgatcaccgtgctgacgaagcggatggccgagcag
ctcaccgagtttctcgccgaccacggcgtcaaggtgcgctacctgcacagcgacatcgac
acggtggagcgggtcgagatcatccgcgacctgcgactcggcacgttcgacgtgctggtc
gggatcaacctgctgcgcgaaggcctggacattccggaagtgtcgctcgtcgcgattctg
gacgcggacaaggaaggcttcctgcgcgccgagcgctcgctgatccagacgatcggccgc
gcggcgcgcaacgtgaacggcaaggcgatcctctacgccgacacgatgaccgaatcgatg
aagcgcgcgatcggcgagaccgagcggcgccgtgcgaagcagatcgcgcacaacgagaag
atgggcatcacgccgcgcggcgtcgtgaagcgcatcaaggacatcatcgacggcgtctac
aacgccgacgacgcacgcgccgagctgaaggaagcgcagcaacgcgcgaagttcgaggac
atgtcggaaaagcagatcgcgaaagaaatcaagcgactcgaaaagcagatggccgactac
gcgaagaacctcgagttcgaaaaggccgcggccacccgcgaccagctggcgctgctacgc
gaacgcgtgttcggcgcgaatgtgggcgaccacgtcaacggcggccggtaa
DBGET
integrated database retrieval system
