Burkholderia ambifaria AMMD: Bamb_2352
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Entry
Bamb_2352 CDS
T00398
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bam
Burkholderia ambifaria AMMD
Pathway
bam03030
DNA replication
bam03430
Mismatch repair
bam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Bamb_2352
03430 Mismatch repair
Bamb_2352
03440 Homologous recombination
Bamb_2352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bam03032
]
Bamb_2352
03400 DNA repair and recombination proteins [BR:
bam03400
]
Bamb_2352
Enzymes [BR:
bam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Bamb_2352
DNA replication proteins [BR:
bam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Bamb_2352
DNA repair and recombination proteins [BR:
bam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Bamb_2352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
DUF655
Motif
Other DBs
NCBI-ProteinID:
ABI87908
UniProt:
Q0BD65
LinkDB
All DBs
Position
1:complement(2590682..2594215)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSDPRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGK
GIKPIAGCDVWITNPDDRDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYRGRAELDASW
LDGELSQGLLALSGAQQGDIGLAFAADNEEAARRHAERWAKVFPGGFYIELQRYGQPGAE
AYIQQAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANPRRQKRFTTDQY
FRTQDEMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKE
GLEKRLEQLYPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPV
GPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYV
KEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIADAMK
EEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGG
VVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKADWSLAQVPLDDPASFQ
ILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREK
VEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMVKHRE
IFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAA
NMTLAMDDTDKVKILFDDCIVNNLVVLPPDINQSHYRFEPVGEADGKRSRTIRYGLGAVK
GSGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRAGAFDSLNANRAQMLA
SVPLAMEAAEQAAANAMQAGLFDMGAESPHAHALVDEPAWDDKRRLQEEKGALGFYLSGH
LFDAYRDEVRRFVRQKIGDLKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGSGQCEIT
IFNEQFEANKALFKEDELLIVQGQARNDAFTGGLRFTADTVMDLERARSRYAQAVRLTMN
GNADAAALRRVLEPHVSKDDSAAAPAFEAPVPRGGGRDGGRRPQAPLPNGLAVQVHYSNA
RAQGEMRLGDAWRVKPSDTLLAELRATFDGSVVEITY
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcctcgcttcgtccatcttcgcgttcactccgaattctcgattgccgacggc
atcgtgcgtctcgacgacatcgtcaaggcggcggccgcggacggccagggcgcgctcgcc
ctcaccgatctcggcaacgcattcggcctcgtccgtttctaccaggaagcccgcggcaag
ggcatcaagccgatcgccggctgcgacgtctggatcaccaatccggacgatcgcgacaaa
ccgtcgcgcctgctgctgctggtgaaggacaaggtcggctacctgaacctgtgcgagctg
ctgtcgaaggcatggctcacgaaccagtaccgcggccgcgcggagctcgacgcgagctgg
ctcgacggcgagctgtcgcaagggctgctggcgctgtcgggcgcgcagcagggcgatatc
gggctcgcgttcgcggccgataacgaggaagccgcgcgccgtcatgccgagcgctgggcg
aaggtgttcccgggcggcttctacatcgagctgcagcgttacggccagccgggcgccgag
gcgtacatccagcaggccgcgacgctcgccgcgtcgctcggtctgccggtcgtcgcgacg
catccgacgcagttcatgaccgacgacgatttcaccgcgcacgaagcgcgcgtgtgcatc
tcggaaggcgacatgctcgcgaatccgcggcgccagaagcgcttcacgaccgatcagtac
ttccgcacgcaggacgagatggtcgcgctgttcgccgatctgccgtcggcggtcgcgaac
acggtcgagatcgcgaagcgctgcaacctgaagctcgagctcggcaagccgaagctgccg
ctgttcccgacgccggacggcatgtcgctcgacgattacctggtccagctgtcgaaggag
gggctcgagaagcgcctcgaacagctgtatccggatacggccgagcgtgacgcgcagcgc
gacacgtactacaagcggctcgaattcgagtgcgggaccatcacgaagatgggcttcccg
ggctacttcctgatcgttgccgatttcatcaactgggcgaagaacaacggcgtgccggtc
ggcccgggccgcggctcgggcgccggctcgctggtcgcatacgcgctcggcatcaccgat
ctggatccgctgcgctacaacctgctgttcgagcgattcctgaatccggaacgcgtatcg
atgcccgacttcgacatcgacttctgccagcacggccgcgatcgcgtgatccagtacgtg
aaggaaaaatacggcgcggacgccgtgtcgcagatcgccaccttcggcacgatggccgcg
aaggcggccgtgcgcgacatcggccgcgtgctcgatctcggctacatgttcaccgatggc
atcgcgaagctgatcccgttcaagccgggcaagcacgtgacgatcgccgacgcgatgaag
gaagagccgcaactgcaggagcgctacgaccacgaggacgaagtgcaccagctgctcgac
ctcgcgcagcgcgtcgaggggctgacgcgtaacgtcgggatgcacgcgggcggcgtgctg
atcgcgcccggcaagctgaccgatttctgcccgctgtacacgcagggcgacgacggcggc
gtcgtcagccagtatgacaaggacgacgtcgaagccgtcggcctcgtgaagttcgacttt
ctgggtctcacgacactgacgatcctcgactgggccgagcgctacatccgccgcctcgat
gcgtcgaaggccgactggtcgctcgcgcaggtgccgctcgacgatcccgcgtcgttccag
atcctgaagaaggccaacacggtcgccgtgttccagctggaaagccgcgggatgcagggc
atgctgaaggacgcgcagcccgaccgcttcgaggacatcatcgcgctcgtgtcgctgtac
cgtccgggcccgatggacctgatcccgagcttttgcgcacgtaagcacggtcgcgagaaa
gtcgagtatccggatccgcgcgtcgaacccgtcctgaaagagacctacggcatcatggtc
tatcaggagcaggtgatgcagatggcgcagatcatcggcggctactcgctcggcggcgcc
gacttgctgcgtcgcgcgatgggcaagaagaagcccgaggagatggtcaagcatcgcgag
atcttcgccgagggtgcggcgaagaacggcctcacgcgcgagaagtccgacgagatcttc
gacttgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggcggcctacgca
ttgctcgcgtattacaccgcgtggctgaaggcgcaccatccggccgaattcatggcggcc
aacatgacgctcgcgatggacgacaccgacaaggtgaagatcctgttcgacgattgcatc
gtgaacaacctcgtcgtgctgccgccggacatcaaccagtcgcattaccgcttcgagccg
gtcggcgaagccgacggcaagcgctcgcgcacgatccgctacggcctcggcgcggtgaag
ggcagcggccagaacgcgatcgaggaaatcctgcgcgcgcgcgaggaaaagccgttcacc
gacctgttcgacttctgcgagcggatcgaccggcgcgtcgtcaatcgccgcacggtcgag
gccctgatccgcgccggcgcattcgattcgctgaacgcgaaccgcgcgcagatgctcgcg
tcggtgccgctcgcgatggaagcggccgagcaggccgcggcgaacgcgatgcaggccggc
ctgttcgacatgggcgccgagtcgccgcacgcgcatgcgctcgtcgacgaacccgcttgg
gacgacaagcgccgcctgcaggaagagaagggcgcgctcggcttctacctttccggccac
ctattcgacgcgtatcgcgacgaagtgcgccggttcgtgaggcagaagatcggcgatctg
aaggaggggcgcgataagctcgtcgcgggcatcatcgcgtcgctgcgcacgcagatgacc
cagcgcggcaagatgctgatcgcgttgctcgacgacggttcgggccagtgcgagatcacg
atcttcaacgagcagttcgaggcgaacaaggcgctgttcaaggaagacgaactgctgatc
gtgcaggggcaggcgcgcaacgacgcgttcaccggcggtctgcgcttcacggccgacacg
gtgatggatctcgagcgtgcgcgcagccgctacgcgcaggcggtgcggctcacgatgaac
ggcaatgcggatgcggcggcgctgcgccgcgtgctcgaaccgcacgtgtcgaaggacgat
tcggcggccgcgcccgcgttcgaggcgcccgtgccgcgtggcggcgggcgcgacggcggc
cgtcgcccgcaggcgccgttgccgaacgggctcgcggtgcaggttcactacagcaacgcg
cgcgcgcagggcgaaatgcgtcttggcgacgcgtggcgcgtgaagccgagcgacacgctg
ctcgcggagctgcgcgcgaccttcgacggcagcgtcgtcgaaatcacgtactga
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integrated database retrieval system
