Burkholderia ambifaria AMMD: Bamb_2355
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Entry
Bamb_2355 CDS
T00398
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bam
Burkholderia ambifaria AMMD
Pathway
bam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bamb_2355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bam03019
]
Bamb_2355
Enzymes [BR:
bam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bamb_2355
Messenger RNA biogenesis [BR:
bam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bamb_2355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Fe-ADH
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABI87911
UniProt:
Q0BD62
LinkDB
All DBs
Position
1:complement(2596462..2597955)
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AA seq
497 aa
AA seq
DB search
MSDSVAKPVDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTG
KTASFSLPIIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAV
VFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA
EGDKHGAVVQLLRDRGLKQVLVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQAL
DAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSL
CSPNERKQLADIEKLIKRPLEVQTLALDKPSRHRHDERGGERGGERAGERSGERGGRRER
DEHRGASARRSGGSERGGHHRRHEAPVDDFFLKPYEPSVPATQPDETQSAQQHEKKGPKR
QVAALLGGFGMPRKPSA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattctgtcgccaagccagtcgacgcaaccttcgatcaattcggccttgccgcc
gatatcctgaaagccattgcggagcagggttatacgacgccgacgccgatccaggcacag
gccattccggtcgtgctcgccggccgcgacgtcatgggcgccgcgcaaacgggtaccggc
aagaccgcgagcttctcgctgccgatcatccagcggctgctgccgcaggccagcacgagc
gcgtccccggcgcgccacccggtgcgcgcgctgatcctcacgccgacccgcgaactcgcc
gaccaggtcgccgcgaacgtgcacgcgtatgcgaagcacacgtcgctgcgcagcgcggtc
gtgttcggcggcgtcgacatgaatccgcagatggccgagctgcgccgcggcgtcgagatc
ctgatcgcgacgccgggccgcctgctcgaccacgtgcagcaaaagacggcgaacctcggt
caggtccagatcctcgtgctcgacgaagccgaccggatgcttgacatgggcttcctgccc
gacctgcagcgcatcctgaacctgctgccgaaggagcgccagacgctgctgttctcggcc
accttctcgccggaaatcaagaagctcgcatcgacctacctgcgcaacccgcagacgatc
gaggtcgcgcgcagcaactcgaccaacgcgaacgtcacgcagatcgtctacgacgtcgcc
gaaggcgacaagcacggggccgtcgtgcagctgttgcgcgatcgcgggctcaagcaggtg
ctcgtgttctgcaacagcaagatcggcgcgagccggctggcgcgcaatctcgagcgcgac
ggcgtggtcgcgtcggcgatccacggcgacaagtcgcagctcgagcggatgcaggcgctc
gacgcgttcaagcgtggcgagatcgaggcgctggtcgcgaccgacgtggccgcgcgcggt
ctcgacatcgccgaactgccggccgtgatcaacttcgacctgccgttcaacgcggaagac
tacgtgcaccggatcggccgcacgggccgcgcgggcgcgacgggcgatgcgctgtcgctg
tgcagcccgaacgagcgcaagcagctggccgatatcgaaaagctgatcaagcgtccgctc
gaggtgcagacgctcgcgctcgacaagccgtcgcgtcatcgtcacgacgagcgcggcggc
gagcgcggcggcgagcgtgcaggggagcgcagcggtgaacgcggcggccgtcgcgagcgc
gacgagcatcgcggtgcgtcggcgcgtcgttcgggtgggtccgagcgtggcggccatcat
cgtcgccacgaggcgccggtcgacgatttcttcctgaagccgtacgaaccgtcggtgccg
gcgacgcagccggacgagacgcagtccgcgcagcagcacgagaagaaggggccgaagcgt
caggtcgccgcgctgcttggcggcttcgggatgccacgcaagccgtcggcgtaa
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integrated database retrieval system
