Burkholderia ambifaria AMMD: Bamb_2723
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Entry
Bamb_2723 CDS
T00398
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bam
Burkholderia ambifaria AMMD
Pathway
bam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bamb_2723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bam03019
]
Bamb_2723
Enzymes [BR:
bam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bamb_2723
Messenger RNA biogenesis [BR:
bam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bamb_2723
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Ric8
Sacchrp_dh_NADP
CMS1
Cas3-like_C_2
DegT_DnrJ_EryC1
CARD_2
Motif
Other DBs
NCBI-ProteinID:
ABI88279
UniProt:
Q0BC44
LinkDB
All DBs
Position
1:3000136..3001578
Genome browser
AA seq
480 aa
AA seq
DB search
MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPP
QRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRD
IERLIKREIPQEVIAGFEPDPSAKPEPIQQRRGQQPRGGNAGGGGGNRQPRAGGSGQPAA
KREGGAQPKAAKAAKPRTAGGAGGNAGGGRPSGGNAARPASGNAAHPNRNRSSRSGQRGH
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctctcggcttggccgaaccgctggtcaaggcggtcaatgagctcggc
tacacatcgccgacccccatccagcagcaggccatccccgccgtcctcggcggcggcgac
ctgctcgccggcgcacagaccggcaccggcaagaccgccggcttcacgctgccgatcctg
cagcgtctgcacacgtattacgccgagcatcgcggtgcaaagcgcgcggtgcgtgcgctg
atcctcacgccgacgcgcgaactcgccgcccaggtcgaggaaagcgtgcgcgcatacagc
aagtacgtgaagctgcgctcgaccgtgatgttcggcggcgtcagcatcaatccgcagatc
gacgcactcaagcgcggcgtcgacatcgtcgtcgcgacgccggggcgtctgctcgatcac
atgcagcagaagacgatcgacctgtcgaatctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctggcgaagctgccgccg
cagcgccagaacctgctgttctcggctacgttctccgacgagatcaagtcgctcgccgac
agcctgctcgattcgccggcgctgatcgaagtcgcgcgccgcaacaccaccgcggaaagc
gtcgcgcagaagatccacccggtcgatcgcgatcgcaagcgcgagctgctcacgcacctg
atccgcgaacacaactggttccaggtgctcgtgttcacgcgcaccaagcacggcgcgaac
cggctcgccgaacagctgacgaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcccgcacgcgcgcgctcgcggagttcaagagcagcacgctgcaggtgctg
gtcgcgaccgacatcgccgcacgcgggatcgacatcgaccagctgccgcacgtcgtcaac
ttcgacctgccgaacgtgccggaagactacgtgcaccggatcggccgcacgggccgcgcg
ggcgcgaccggtgaagccgtgtcgctcgtgtgcgtcgacgagaagcagctgctgcgcgac
atcgagcggctgatcaagcgcgagattccgcaggaagtgatcgcgggcttcgaacccgat
ccgagcgcgaagccggaaccgatccagcagcgccgcggccagcagccgcgtggcggcaat
gccggcggcggcggtggcaatcgccagccgcgagcaggcggctcaggccagccggccgcg
aagcgtgaaggcggtgctcagccgaaggccgcgaaggcagccaagccgcgcacggccggc
ggcgcgggcggcaatgccggcggcggccgtccgtccggcggcaacgccgcacgccccgcg
agcggcaacgccgcgcacccgaaccgcaaccgttcgtcgcgcagcggccagcgcggtcac
tga
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